HsaINT0044650 @ hg19
Intron Retention
Gene
ENSG00000115165 | CYTIP
Description
cytohesin 1 interacting protein [Source:HGNC Symbol;Acc:9506]
Coordinates
chr2:158271131-158275101:-
Coord C1 exon
chr2:158275035-158275101
Coord A exon
chr2:158272656-158275034
Coord C2 exon
chr2:158271131-158272655
Length
2379 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
3' ss Seq
CAGTAGACTTTGTGCTCTAGGTG
3' ss Score
5.17
Exon sequences
Seq C1 exon
CAAACTTTGAAACAAAAATGGGTGGAGTACAGATCTCTGCAGTTACAGGAACATCGTCTGCTTCATG
Seq A exon
GTAAATGCAATTTCCTGTTCAGAAACCACACTAACATTACTTCTTTCAGTATTTCTGCCTCAAAGTTGGTTTAAGATTATCATCATTATAAGAAAAATTTGTCTAGTGCTGGTCAAGGAAATGGGTCTGTGTTTCTTTGGCATGAGCTTTGGAATGGCTGTATTTGGAGGAGGGGTAAGGCAAGTCAGATCCACTACTGCGTATCATGACGCAGATGCACATGCACACAGATGCACATGCTCGAAAACAGGCACCTGGAGATTTTAGAAAATCATTGGGGAAGATTGCCTAACTTTCCTTCTACTTCAGTGAATGAATTACATTTCTGAAAACAATCACGGCTAAGGGGCTGTATAGTTTTTAGAAGCTATTAAAGCTGGAATGGTTGCACACTTATTGGGTAGAGCTCCTGTCTTTTGTTTAAATTGCATAAGTTGCATTTATGCAGAGAAATTCTTTTTCATGGCCCCCAAGACAAAGACATAAATGCGTAAGATGAATACAACAGTAAATGCATAGCTCTTGCCATTGAGTGCATTTTTAAGGGAAGGGTTGAGTTTAAAATGTGTTAATTCGCTATTTGTTGTATGATAGATGTAACCAAAGGAATGAACTTTTGTGTACAAATAATTCACTGAAACCACTACGTGGGTGTGAAATATAGCTTATCTCTTCTTTAAATAGCACCAAGCTTAAGTCTGTAACCTAGAATATCTGTTAAAAGTGATAATCAATTTGTTTACCAAAAAAGATAACAATTTAATCCTTAACTAGTCACTAATTTATGGCTTAGAGTTCTGGTATGAACTTCTGTTTTTTTTTTTTTAAATTGAAGTGTTTGAAACTTATGTACAAGTTACTTCTCTTTTTTATGTCTTCATTTAATATTTTTAAAAAATTCATAATAGTTCTTTTGGGTAGTGAAGTTTGTTAGAGAGGCAGAAATATTTAATACAAAAACTTCTTTATGGCCTTGTAAATTCAGCCACCTCCTTGCTTTCTTTAGACATGAGGGCTTTTTAGCCTCATTTCCACTTCTGGAGCATCCTGAATGGCCCAGTGAATATAAATTCTTGCTGTTCTATAGAAACAGCCTTGTATAGACAACATTGTTAGGTCAGGATCCTCATAAAGTCATTGTTGTACATATTTTTTGAGCAATTGAAGGAGTTCTGCTTTTTCTAGATGTATAGTAAACATCCAGGGCATGTGATTCTATAAGGCAATTGCTCTCCAATCAAAAGAAATTCATCACTTATTGCAAGATGAAATGAAGTAGGTTGTATTAGCAAAAAGGAAAGCATTATGACTAGTCACCATGGGGCTGGCTGTACTCAACCTTGCAAATCATCTGAAAGAACAGTTTCTTTTTATATTGTCAACCGAGGACAAAAGACAGCAGCAGTGGAGATAATCAGTACAAAATAAAACCATTTTAGAGTGTACAGTATTCTATTATTTTTTCTGAAGCATAGTCACTTACTGATTACGTTTTTCCAAGGCTGGTATTACAAGTTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACAAGATACCAACCAACTCAGTTAGTGTGGAAGCAGGGAGGGTCATATTGGTATGTGATTAACATTAGAGTTTGAAGAGCCAGATGTACGTTGTTAAGGATCAATGAAAAAAATTTAGCCAAGCAGATAAAATTCAATTTCTTCAAATAAATTATTACTTACTTGAGGACAAGGATGATTTCTGGGTACAGTATCATTCCAGAGAATTTAAGTATTCCAAAACGAAACTGGGAATATTGAGGTTGGAAGATACATTTGATTTCACAAATCCTTTCTCTAAGAAACACTTTTGAATTACCTGTTCCATAACTGTTTTCTATTTACTTCAAATGGTTTTATAATAATTTTAGAATTATTTTTAAAAGACAGTACCTAAGAATCAGAGAAACTAAGTGGAGAAAATCATGATAGTATTTCCCCAAGTGTATTCTATGGAACCCCATTTCTGTGAGAATTTTAATAAAAGGTTTCAGGGTTATTTAAATTTAAGAAATGATCATTTTGGAGGTTCAGATGCCACACTGGTAGACTGTCAATTGGGCTGAACTGTTCTCATATGAAACATCTTGTTTAAATTTATTCTAATATTATAATTTTTGTGACCATGGAACCTTGGTCTATGAACAATAGTTCAGGAAACCCTACTATAAGGTTTATCAAATGGTCTCATAAACAGTTACTTATTCAAGCACGCCAAAGCTCAGTGAAAAGTATTTTTCACCCTTACTCTTTCTCGTGTCATTCAAAGAGAAGTTTTGATGTAGTGTATTTATTTGTAGGGAGTAATGAACAGATCCATTTCACAGTAGACTTTGTGCTCTAG
Seq C2 exon
GTGATGCAGCTAATTGCCCCAGTTTGGAAAACATGGACTTGGATGAATTGTCTTTGTTTGGACCCCTGCCTGGGCCAGGCCCAGCCCTTGTGGACCGGAATCGATTATCCAGTGAGAGCAGCTGTAAGAGCTGGCTGAGCTCCATGACGATGGACAGTGAAGATGGCTACCAGACGTGTGTGTCTGAGGACTCCAGCAGGGGTGCCTTCAGTCGGCAGACGAGTACAGATGATGAGTGCTTTATCCCCAAGGAGGGGGATGATTTTCTGAGGAGGTCATCTTCAAGGAGGAACCGGAGCATCAGTAACACCAGCAGCGGATCCATGTCTCCCTTGTGGGAGGGCAACTTATCAAGCATGTTTGGGACCCTGCCCCGGAAGAGCAGAAAGGGAAGTGTCCGAAAGCAACTCTTGAAATTTATCCCTGGCCTTCATCGTGCTGTGGAAGAGGAAGAAAGTCGCTTTTGACGGATTGTGGTGTCCTTTCAAATTAGCTTATTTCACAAATATCTCTAGACTCACCCAGATCCCAGCTTGGTGGGAAAGTGCAGAAGAATTGCAAAACTGACATCCCATTTCACAGCAATAGTGACCTTTATTTAAATTGTTGTGTTATAGTTTATGCTTCTTAAATCATTTTTCAACCTAAACAGCCAATTTCTAAGCAGACAGGAAAACTAAATAATAAGTTAATTAATATAACAAAGATGCAGGTTCCTGCTCATTCCAGTAATGTCTTTGAAAGCAAAACTAATATTTATTTTCTAGATTATCCCTGTGAATAATTGAGAACTTTTTGGAGTCAAGTATGAATAAAGGTGTGGCAGAATATAATAATCTGGACTATTTTCTATAGGATAATTGCTGGGTTATAAAATCTTAGGTTTGCTTATGCCCAGTAGCTCCTGCGGAGGCTTAATAATAGGCAATTTTGAATTTGTTCAAACCTGTAATGGCTTGTAAACAAAGATGACCATCAGCTGTTTCTCACATCTATAGTGACAATAAAGCGGGAAGTATAAGATTTAATAGGAGGGGTTAAGGTTCATGAGAACCATGGAAAGATGTGGTCTGAGATGGGTGCTGCAAAGATCATAATAAAGTCATTTTTATAGACAGTCTAAACAAAATGGGTGGGGATGTCGTGTTTTTTGCCCAATTCAGCTTTTGTTCTGCCTGAACATTAATGGCAAGTCTAGAACTCTCCGAATCCTACAGCTTTGTAATTTTTTTTCTACAAATGTCTAACATCCAAAACTGAGGGTTGGGAAAAGGACTTCCCTCCTGTAGTTTTTTTCATATTACTTCTCACTTTATATCTTATATTCTAAATAGCTATCACCTCAGCAGTCTTTTGCCTATTGGTTATGTTAGTATCACATTACTTCTAGCCTTTCAATTACTCCATGTTTTATTTAATATCCATTGAAGTCTATGAATTCTCTGTTCTGGTGGCACAGCTATTCATAACCTATATTCTAGAGTAGACAATCTGGACTATGTAATAAATAGTCTGCTGATTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115165-CYTIP:NM_004288:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.265
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)