BtaINT0048010 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003610 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr11:94588534-94590851:-
Coord C1 exon
chr11:94590811-94590851
Coord A exon
chr11:94588606-94590810
Coord C2 exon
chr11:94588534-94588605
Length
2205 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
AACTGACATTTTTATTATAGAAA
3' ss Score
5.22
Exon sequences
Seq C1 exon
GGAGTGATAAGCTATACCACCAGTGGCTCTCCACAGTCCGG
Seq A exon
GTAAGTGCCACCCCCGCAGAGCTACCTGGGCTCCTCCTTGGCTGCTGGCCGCCCTCCTCCTGCCCTGCCACCCACAGTGCTGTCATTCGGCCCAGGGCACTGTGTGTGCCCAGCTGAAGATACTTTTGTTTGTAAAGCCAGGCCATTCTGGTGCCAGGTGGAGACTAGCAGGAAGAGACTGTCCAAAGTCCGCCCTCAGTGAGGGTGATGAGAGGCAGGAGAAGCTTCCTTGCCTCAGGAAGCAGGCCAAGGCGTGTTGAAAGGATATTGCCTCCTCAGAGGATTTCCAGGGGTCTCTTTCTAGGGTCAGACCAGTTGGGAACTTTTCATGAGAAACCCAAAAATCGGTCCCACTTCCTGCTCTGAAATACGTTTCACAGCACAAGGCTCCTGGGAGGATGGAAAATGCATCACTGAGGGTTTTCGTCCCCTCACTCTTGTTGTAAGCAGTTTTTGATTGTGTTAGAAGCCAGGTGCTAGGGCTTCAAAAGCCACTAAAGAATTCAGATGTTGCCTTTCCTTAAATGGGTTCGTCAGTGAGTACGTACCAAAGGCTTTCTGTGTGCCGGGCGCCGCACTGGGTACTGGGATCCAGTGGGAAGCAGGACACAGGCCCTGCCCTGGGGGAGATCCTGCTCTTGCTGGGGAGGCAGGCGCATAAACAGGAGCCCCAGCGCGGTGTGGTAAGTGTGCGCTCCTGCTCATGGGCCAAGCATACTGCTGCCAAGGCGGGTCCCTTGGAAGTGGCTGCAGTTGGCCGAGAGTAAGCAATTCCTCAATGAAAGGTTTCTTTTGTTCTTCTCGAATGGCCAAACATGGCACTTGGCAAATCACAGACAAGCAATAAGGACTCGTTGATTGATTGATAAAGGGAGTTTTAATACTCTAAAGGACCATTGAAATAGGATACAGAGTAATTTTGGAAAGCAGTATGGAACAAATGAGTGGGTGAAAATTTCCTATTATCCTACAACAGAGAATGCTTTCTAGGTCAAATTTTGAAGTTTTTAATTAAAGCTCAAGGTTTCTAATACAGGCGGTTACCAAAAATTGTGCTAAAAGTTAATCCCAATAATTATATAGTATGTCTGACTCTTTTGTATATGCCCTGAATCCAATTTCTCTTTCCATTCAAATCTATTGGGATTGTTGCAGAAAAACCCGAATGAACTTTTGGGCCAACCCAATATCTTTCCAAACCACCACAAATCTGATTATGTGATGCACTTGGTTAAAAATCCTCTGGGGTATGGACTGCTCATGCTGGCCCTCTGTGGTTGACCCCATCTGGCTCTCGGTTCCACTCGCCAGTCCTCCTATGATGCGCTGACTGTTGTTACTCACAGAACATGCCATGGCTTTACAGCTTCTGCGCTTGTTTATGAGCTGCTTCCTGTCCCTGGAATGTCCTTATCCGCGCTGTCCCCAACACAAGCGCCTACTCTTCCTTCATGGGCCAAATATTTCATCCTCTGTTGCCTTCCCCATCCTGCTACACAATGAGCTGCTGCCACCTGCCTTGTGCGCACGGCCAGTGTGGTTCTTGCCACCTTGGGTGGCACTTGTTTCCCCCCAGACTAGGGGTCTTTGAAGGCAGAGACCTGCCCTCTAGTGGCTTGGTACCCTCAGAACCTAAACCGGGGCATCCCCACCGTGAGTCCTTACAAACAACACAGAAAACCAGGGGGAAGAAAGGAGGCTGCGTGACTTAAGGTAGTCACAGTAGCCAGATAACCTTGCCTAATCGGCCCTCAGTTTTCTGCCCCAGCTCAGTGTTAGCATCCATTGTTATTAAACTTATCTTAGTGTTGTCCGTGGTAACTAGAATTTCTTGAGAAGAAATTCTTGTAGATTTCTTGTAGAATTCCTTGTAGATCACTCCAAAGAAAGCTTTGCCTCAGAGACCCTGTGATGAGCTTTCCTCCCAGCCAGCAGACAGGTGCCAAGCACAATACTGAGCCTGGGGTCCCACCTCAGCTATTCTGTCACCACCCACCATCCCCCCTCTGCCCCCACACCCACCCATAGGGATTCTGCTGTGGTCGGAATTTAATTGCCCAGGACCAGTCACCATCTAAGCCTGTTCCTCTAATTAAGTTACACACTTTTGAAATGTTGCTTAACTTGATTAAAGAGAAGAGGTCTTTGTTGCTGTTGGCCTACTATATCTTCAGTCCAAATTGCTAACTGACATTTTTATTATAG
Seq C2 exon
AAAGGAAGTGGAGCAATTTTGAATACTGTAAAAACGAAAGCAAACCCGGCCATGAAGACTGTCTATAAGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003610:ENSBTAT00000061512:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development