MmuINT0048201 @ mm10
Intron Retention
Gene
ENSMUSG00000035392 | Dennd1a
Description
DENN/MADD domain containing 1A [Source:MGI Symbol;Acc:MGI:2442794]
Coordinates
chr2:37853993-37856156:-
Coord C1 exon
chr2:37856116-37856156
Coord A exon
chr2:37854065-37856115
Coord C2 exon
chr2:37853993-37854064
Length
2051 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
GATTGACATTTTTATTACAGAAA
3' ss Score
5.73
Exon sequences
Seq C1 exon
GCAGTGATAAACTGTACCATCAGTGGCTGTCCACAGTCAGG
Seq A exon
GTAAGTATGCCCCACTCAGAGCCACCTGGTTTCCTCTGTGGCCTCCTGGCAGCCTCTACTCCATGGCCACCTACAAAGCTGCCTCAACATAGCTTTCCTTGTCCTCTCAGCTGAAGATGCTTTTGTCTTAATGCCAGGCCACCATCCTGTGGAAGGGACTAGAAGGTGATGGTCTTCCTTAATGGGAAAAATGAGGCAGGAGAGGCTCCCTCCTCTTCAGGCCAGCCAAGTCAGGTGGAGTGAAGTATTGTTCTAGAACATTCCCTTACATGGCCAGGCAGTTGTGATCACAACAAAGCCAGAGATGTATCTCCCTTGCTTTGCTGCAGTGTCTTTCACTGCAAGGGCTCCTGAGAAAGTGGAAAACATATCTGGGAGACATTTCTTTCCTCCTTACTGCAATTGTGAAGTGTCTTGTTGAATTGGGAGCCAGGTGCTCAGGGCTCCTGTGGCCTCTAAGGAGTTCAAAGTTTTCCTGACTTTTCCATGACTTTCTAATGAGTATGTTCTCAAGGCCTACTGTGTGCCAGGGACAGCTGGCCCCTGGGAATCCAGAGGGGGGCGGGTCCTGCCCTGGGGGAACTCCCCATCTCATTAGGGAGGCAGGTATGTAAACAGGCAACTCCAGCATAATGTGATAAGTGTTCTCCCCTGCTCTTGGCCAACCACAGCTGCTGCCAAGGCTGGTCCCATGGAAGTGGCTGCAGTTGGCCAGAGTAAGCAGCTCCCCCATGAAAGACTGCCTTTGTTCTTGGATGGCCAAACACAGCACTTGGCACATCAGAAGCAAGCAATAAGGACCTGCTGATTGATTGATAAAGGGAGTTTCAGTACTCCAAAGGACCCTTTAAACAGTGTTCTGAGTAATTTTGGAAGCCAGCACGGAATAGATGAGTGGGTGAAATTTTCCTATTGTCCTACAACATAGAATGCTTTCTAGGTCAAACTATGTTGTTTTTCATTGAAACTCAAAATCTTTAAGGCAAACTGTTGTGCTAAAAGTTAAACTCAATATTTACTGTCATCTCTTACATGACATGTTTGACTAAAAGTCCTCCAGAACATGATCCCCTGGGCCCAGCAGTCCCGGCTCTGTCCATGCCACCCCATCTGGCCTCCTAGCCTCGTTTCCACCACGGGTCAAGAACCCCTGTCCCTCTCAAGAGCACACCCATAGCTCTCAACCTTTGTACTTCATTATGTGCTGTTTCATACTCTGAGAATATTCATACCTGCTATGTTTCATATCAACCTGCACTCACCCGCCATGGCCTAGGTCATGTTTTCTCCTCCGAGGCCCTCCTCAGTCTTCTGGACTCCAAACTCCCTGCAGATAACCAGTGTAGCTCTCACCATCCAAATGTGCTCATTTACCTGCTGTGTCTCTCACCCATACACACAAAGCCTGGTGGTCTCCAAAGAAACCCCTCCCTTGACTCAGAGCACTTACAGCCATATAACATGCTACAGGGGTACGATTCCCCTGATGGCCTGAGCACTTCACTTGGCTGCCTCCTAAGCAATAGAAACCCTTCATCCATATCTTCCTCCCATGCTCCCCAGGGAAAGTGACAAACCATATTGCCAGGGGCTTCTGCTTGATCAGGACCCTGTTTTCTTCCCTAGTGTGGAGTCAGCGAGGTGGTTCACAGCTATGAAATATGACAGAACACTATCTGTGGTAATTAGAAAAATTTTTTAAAGAGCTTCTGATGATCATAAAGAAACTCATGCCTCAAATAGCCTGGACAGGGGCAGGTGCTGGGTGAAACATTGAGCCTACTGTCTCCCCTTGACAAGTTATCACATGCCTCTTTCCCAGCCCCCACACATGTGTGTGCATGTGTATACACAGAGGAGGAGGGAAAGAGAGACAGAGAGTCAGAGTCTGCCATAGCCCTAACTGACCCCAGTAACCACCTGGGCCTGCTTCTCTTCTCACATCACATGCTCTGGAAATGTTGTCTGGCTTGATTAAAGAGAAACCCTTTTTGTTGGTGCTGGCCCACTCTCCCTCCAGCCCACATTGCTGATTGACATTTTTATTACAG
Seq C2 exon
AAAGGAAGTGGTGCGATTCTGAATACTGTAAAAACAAAAGCTAACCCAGCCATGAAGACTGTCTACAAGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035392:ENSMUST00000102787:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.239
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types