RnoINT0046411 @ rn6
Intron Retention
Gene
ENSRNOG00000010526 | Dennd1a
Description
DENN domain containing 1A [Source:RGD Symbol;Acc:1307927]
Coordinates
chr3:22115509-22117673:-
Coord C1 exon
chr3:22117633-22117673
Coord A exon
chr3:22115581-22117632
Coord C2 exon
chr3:22115509-22115580
Length
2052 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
GATTGACATTTTTATTACAGAAA
3' ss Score
5.73
Exon sequences
Seq C1 exon
GCAGTGATAAACTGTACCATCAGTGGCTGTCCACAGTCCGG
Seq A exon
GTAAGTGTGCCCCATTCAGAGCTACCTGGTTTCCTATATGGCCCTGGCAGCTCCTCTCCGAAGCCACTGACAAAGCTGCCTCAAAGCAGCTTTCCTTGTCCATTCTCTCAGCTGAAGATGCTTTTGTCTTAATGCCAGACCACTCTCCTGTGGGATGGACTAAAAAGAAATGGTCTCCCTTAATGGGGAAAATGAGGCTGGAGAGGCTCCCTCCTCTTCAGGCCAGCCAAGGCCAATGAAGTGAAGTATTGTTCTAGAACATTACCTTCCTTTACCAGGCAGTTGTGATCCCAGCAAAGCCAAAGATCCATCTCCCTTGCTACACTGCAGTGTCTTTCACTTCAAGGGCTCCTCTGGGACACTTTTCTTCATTCCTTACTGCAATTGTGAACAACGTCTTGTTGAATTGGGAGCCAGGTGCTCAGGGCTCCTGTGGCCTCTAAGGAGTTCAAAGTTTTCCTGACTTTTCTATGGCTTTCTAATGAGTATGTTCTCAAGGCCTACTGTGTGCCAGGGACAACTGGCCCCTGGAAATCCAGAGGGGGGCAGGTCCTGCCCTGGGGGAGCTCCCCATCTTGTTAGGGAGGCAGGTACGTAAACAGACGCTCCAGCATAATGTGATAAGTGTTCTCTCCTGCTCCAGGCCAACCACAGCTGCTGCCAAGGCAGGTCCCGTGAAAGTGGCTGCAGTTGGCCAGAGTAAGCAGCTACCCCATGAAAGACTGCCTTTGTTCTTGGACGGCCAAACACAGCACTTGGCACATCAGAGGCGAGCAATAAGGACCTGCTGATTGATTGATAAAGGGAGTTTCAGTACTCCAAAGGACCCTTTAAACAGCGTTCTGAGTAATTTTGGAAGCCAGAACGGAATAGATGAGTGGATAGAATTTTCCTATTGTCCTAAAACATAGAACGCTTTCTAGGTCAAACTGTGTTGTCTTTCATTAAAACTCAAAATCTTTAAGGCAAACAGTTGCCAAAAGTTGCGCTGAAAGTTAAAGTCAATACTTACTGTCATCCCTTATATGACATGTTTGATTCAGAGTCCTCCAGAGCATGATGATACCCTGGACCCAGCATTCCAGGTTCTGTTCGTGCCACCCCATCTGGCCTGCCAGCCTCATTTCCACCATGGGTCAAGAACCCCTGTTCGTCCCAAGAGCACGCCCATAGCTCCCAACTTTTGCACTTTTTAATGTAGTTTCATACTCTGAGAATATTCATATCCTGCTATATTCCATATCAGTCTGCACTCAACCTCCATGGTCTAGGTCAAATGTTTTCTGCTCTGAGACCCTCCCCAGTCTTCTGGTCTCCAAACTTCCTGCATGTAACCAATGCAGCTCTCACCATCCAAATGTGGCATTTGCCCTTCTGTGTCCCTCGCCCATACACACAAAGCCTGGTGGTCTTCAGAGAAACCCTCCCTTGGCTCAGAGCCCTTCAGCCTTGTAACATGCTGTAGGTACAACTACAAATGGCCTGTGCACTTCACCTGGCTGCCTCCTAAGCCGTGGAAAGCCTTCATCCATGTCTGCCTCCCATGCTCCCCAGGGAAAGTGACAAACCATGTTGCCAGGGGTTCTAGTTAGTCAGGACCCTGTTTTCTTCCCTAGAGTGGAGTTAGCTAGGTGGTTCACAGTTAGGAAATAGGACAGAACACTATGGTAAGTAGAAGTGTTTTAAAGAGCTTCTGATGATCAAAAGGAAACTCATGCCTCAGATAGCCTAGACAGGGGCAGGTACTGAGCAAAACATTGAGTCTACTGTCTCCCCTTGACTAGTTATCACATGCCTCTTCCCCAGTCCCCACACACGTGTGTGCCTGTGTATGCACGGGGGAGGAGGAAGGAATGGGGGAGAGAGAGACAGAGAGACAGAGTCAGAGTCTGCCATAGCCCTAACTAACCCCAGTAACCACCTGGGCCTGCTTCTCTTCTCATATCACATGCTCTGGAAATGTTGTCTGGCTTACTTAAAGAGAAACCCTTTTTGTTGGTGCTGGCCCACTCTCCCTCCAGCCCACATTGCTGATTGACATTTTTATTACAG
Seq C2 exon
AAAGGAAGTGGAGCGATTCTGAATACTGTAAAAACAAAAGCTAACCCAGCCATGAAGACTGTCTACAAGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010526:ENSRNOT00000025443:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.117
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]