GgaINT0124168 @ galGal3
Intron Retention
Gene
ENSGALG00000001157 | DENND1A
Description
NA
Coordinates
chr17:9772202-9773844:-
Coord C1 exon
chr17:9773804-9773844
Coord A exon
chr17:9772274-9773803
Coord C2 exon
chr17:9772202-9772273
Length
1530 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
CATTGTTACTATAATTGTAGAAA
3' ss Score
4.61
Exon sequences
Seq C1 exon
GTAGTGACAAATTGTACCTCCAGTGGCTCTCTACAGTAAGG
Seq A exon
GTAAGAACACAAAACTCTTCCAACAGGCATTCTAACTCTCACTGGACCATTGAACAGTTCTGCATGACTGTAGTCGAGAACAAGACTAACTTGTTTCCTGCAGGGTTTAGCTGTGATGAATTTGAGCGTAGCTGTGAGAAACTAACAAACTCTTCAGGTGGAAAAAAAAAAAAAAAAAAAAAGAAAATATACACTAAAATCAAAATAGGAATTCTCATGTTTTTGAACACCACTTCTTACCTGTCTTGGAAACAGATAGAAATAAGTTATTGTCATTTGAGAAAGTAATGTGTTTTATCCTTCCTTACTAATGGAAAAGAGAGAGGGACCATTGCCACAGCAAAACGTTAGTCATAGTAGTAACTGACACCTGATTTTAGACATCTCTTTTAATGCCTAAAATATGATATGATGTATCAAAAGGTAAAATATTTCTCATCTAAGAGTATAAGTCAGTAGGAAGGGTCAGTTTCTTTCCTGACAGACTTGTTTTTGTACCATTCCATTTGCCTTTTTTTCTGGTTATGAATGGAATTATGTTCCTTATACAAAAAGGCTGGGCCCAGTATTATCTTGATAATTTTGGATGAACTATACCTTATGATGTAAAATCTCATAGTGTAGTTGGATGAAAAAACCTACATACATTACTATAAATAAATAGGATGACGATTTTAAAATTATAGGGATGGTGAATGGCTGACAGTTAATATGAAAATCTGTGTAATTACGTTTGATGTTTGATATTTTTTGTTAAAGAGCAATTGTTCTGTGGAAACATATGTAGCAATTTTTAAAATTGTTTGCTTATGCATCTGATGTCTGGAAGTATGATTTTGCACAAAAATAGGAAAACAAAGTTTTATAAGATTTGATTCTTTCAGTTTTGCCCATTTCTTCTATCAAGCAAGGTACTGTTCAGCAATAGTCAATGGTGTGTGGAAGATGTATAAAAAAACAACGGATTATTCTGTCTGACATAGTGCTTCCTTATGGCTTATTATGTATGCAAATCAGCTTCTCTAGGATTGTTTAGTAGTTAAGATTTCTTTCTCCTTCTATTTATCCCTTTATCCACTTAGATTTTACAAAAGGAAAAATTAAATATATATATTTTTTCCAATTGAATATTTAGAGTTTCCCGAAACTGAGTTTTCTGCCTCAGATATTGATTTGGTAGGATACTTTTTTCTTAAACATGGTTAGAATTTTAATGCAATGTACAGGACACGTTGAGGGTGAGTGGAACAGTCATACTGTTAAAATAATACTGTTTTATGAGTTGACCTGTTGTTACAGCAAGAAATTTAATTTGAAAACCACTCTGTTAAACAGAGTCAGGGTTCCTCCAGTGAAACAGAAAGAAGAATTCAATCTGTTTTTACTTTTGTTCTTTCTCATTTCATTTAAGATTGTAATACTGAGCTCTGCTAATAGACATTAGGTAATGCTTTGTTAAAGTTAAGAATGGACTGCTGTTGGCTTTAAGGAGCTTTGATAAAATTTATTTCATTGTTACTATAATTGTAG
Seq C2 exon
AAAGGAAGTGGAGCCATTTTAAACACAGTAAAGACCAAAGCTAACCCTGCCATGAAGACTGTCTATAAGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157:ENSGALT00000001740:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.117
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]