DreINT0008824 @ danRer10
Intron Retention
Gene
ENSDARG00000014592 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr21:8362433-8362643:+
Coord C1 exon
chr21:8362433-8362473
Coord A exon
chr21:8362474-8362571
Coord C2 exon
chr21:8362572-8362643
Length
98 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
3' ss Seq
TCTTCATCTTTTGAGTACAGAAA
3' ss Score
0.9
Exon sequences
Seq C1 exon
GCAGTGATAAAACGTATCATCAGTGGCTTTTCACAGTGAAG
Seq A exon
GTGAAAGTCTTATTATATATATTTATTTTTTAACAAATGTGTGTGTTATGAGATCTTTCCCTCAGTCTCCTGAAGTCTTCTTCATCTTTTGAGTACAG
Seq C2 exon
AAAGGCAGCGGCGCAATTCTGAACACAGTGAAGACAAAGGCAAATCCTGCAATGAAGACAGTTTACAAATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014592:ENSDART00000143151:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATAAAACGTATCATCAGTGGCT
R:
TGTAAACTGTCTTCATTGCAGGA
Band lengths:
104-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]