BtaINT0048086 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020172 | DENND2D
Description
DENN/MADD domain containing 2D [Source:HGNC Symbol;Acc:HGNC:26192]
Coordinates
chr3:32335599-32336260:+
Coord C1 exon
chr3:32335599-32335683
Coord A exon
chr3:32335684-32336020
Coord C2 exon
chr3:32336021-32336260
Length
337 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
TCTCTTTATATCCCCTGCAGCTT
3' ss Score
9.53
Exon sequences
Seq C1 exon
GTTGGTGATGAAAAAGACATCCTACCACCCAAGCTTCAGGATGACATCTTAGAATCTCTTAGTCAGGGCATCAAGGAGTCACAGA
Seq A exon
GTAAGTCCCAGGTCCCTCTTATTCTGGCTTTCTCCAAAGAGTTTAAGGGCATGATTCCCAACAATTCCCTTCTAAAACTAAAAGGAATTCACTCCGCAGTCCTGGGCTAGTCCCAGAGGCCTTGATCCTAAAGGGCAAGTATGAGATTTTACTCTTCCTAAGCAATGGTGAACCCGTCTCCAGTCTTACATTTTCATCAACCATTAGTTATGAACCCTGCCTCACCCCACCCCTTGACCAAGAGTTTTCAGCCTGCAATGAAAGCCACTTGGAGGTAAGGGTGGGTAGTTTTAATCCTTCTGCTACCCCTGAGATGGTCTCTTTATATCCCCTGCAG
Seq C2 exon
CTTCTGAACAAATCAATGAGCATGTTTCAAGGCCTTTTGTGCAGTTCTTTGTCAAGACTGTGGGCCACTATGCTTCCTACATCAAGCGGGAGGCGAATGGGCAAGGCCGCTTCCAAGAACGGGCCTTCTATAAGGCTCTGACCTCAAAGGCCAACCGCCGGTTTGTGAAGAAATTTGTGAAGACACAGCTCTTCTCCCTTTTCATCCAGGAAGCCGAAAAGAGCAAGAACCCTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020172:ENSBTAT00000026865:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.025
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0345514=dDENN=WD(100=84.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTGATGAAAAAGACATCCTACC
R:
AGGGTTCTTGCTCTTTTCGGC
Band lengths:
318-655
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]