GgaINT0141479 @ galGal3
Intron Retention
Gene
ENSGALG00000000154 | DENND2D
Description
NA
Coordinates
chr26:1019100-1019631:+
Coord C1 exon
chr26:1019100-1019190
Coord A exon
chr26:1019191-1019314
Coord C2 exon
chr26:1019315-1019631
Length
124 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
3' ss Seq
AATGCTGTCTTCTCTCACAGCAT
3' ss Score
9.91
Exon sequences
Seq C1 exon
GTGGGCGACGAGGATCAGATCTTGCCCATCAAGCTGCAGAACGAGATGCTGGCATCTCTGAACAGGCACAACAGCAACAACAACATCCACA
Seq A exon
GTAAGGGCGTCTGTTTACACGGTGTTAAAGCCTGCAGAGGGCACGTGGTTTTCCTAATGGGACCTGGGCTCCATTTGCAAGAACAGAGTCCCATCTTCCCCTCTAATGCTGTCTTCTCTCACAG
Seq C2 exon
CATCCGAGCAGCTGAATGCACTCATCTCCGAGGCCTTCGTGCAGTTCTTTGTCCGTCTGGTCGGGCATTACACCTCACACATCAAGTGGAGTAAAAACGGCCCGGGCACCTTCCAGGAAAGAGCCTTCTGCAAGGCCATCACCTCCAAGACCAACCGCAGGTTCGTGAAGAAGTTTGTGAAGACCAACATGTTCTCCTTATTTATTGAGGACGCAGAGAAGAGCAGGATCCCACAGGAAGGTAAAGGGGGCTGCAGGGTGCTGGGGTGGAGGGAGAAGGGCAGAAAATGCCCCATACCCAGAGAGGGATGCAGGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000154:ENSGALT00000000210:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0345514=dDENN=WD(100=64.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGACGAGGATCAGATCTTGC
R:
CGGTTGGTCTTGGAGGTGATG
Band lengths:
244-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]