GgaINT0141479 @ galGal4
Intron Retention
Gene
ENSGALG00000000154 | DENND2D
Description
DENN/MADD domain containing 2D [Source:HGNC Symbol;Acc:HGNC:26192]
Coordinates
chr26:1018445-1018899:+
Coord C1 exon
chr26:1018445-1018535
Coord A exon
chr26:1018536-1018659
Coord C2 exon
chr26:1018660-1018899
Length
124 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
3' ss Seq
AATGCTGTCTTCTCTCACAGCAT
3' ss Score
9.91
Exon sequences
Seq C1 exon
GTGGGCGACGAGGATCAGATCTTGCCCATCAAGCTGCAGAACGAGATGCTGGCATCTCTGAACAGGCACAACAGCAACAACAACATCCACA
Seq A exon
GTAAGGGCGTCTGTTTACACGGTGTTAAAGCCTGCAGAGGGCACGTGGTTTTCCTAATGGGACCTGGGCTCCATTTGCAAGAACAGAGTCCCATCTTCCCCTCTAATGCTGTCTTCTCTCACAG
Seq C2 exon
CATCCGAGCAGCTGAATGCACTCATCTCCGAGGCCTTCGTGCAGTTCTTTGTCCGTCTGGTCGGGCATTACACCTCACACATCAAGTGGAGTAAAAACGGCCCGGGCACCTTCCAGGAAAGAGCCTTCTGCAAGGCCATCACCTCCAAGACCAACCGCAGGTTCGTGAAGAAGTTTGTGAAGACCAACATGTTCTCCTTATTTATTGAGGACGCAGAGAAGAGCAGGATCCCACAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000154:ENSGALT00000000210:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0345514=dDENN=WD(100=84.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGACGAGGATCAGATCTTGC
R:
CGGTTGGTCTTGGAGGTGATG
Band lengths:
244-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]