HsaINT0046772 @ hg19
Intron Retention
Gene
ENSG00000162777 | DENND2D
Description
DENN/MADD domain containing 2D [Source:HGNC Symbol;Acc:26192]
Coordinates
chr1:111730753-111731408:-
Coord C1 exon
chr1:111731324-111731408
Coord A exon
chr1:111730993-111731323
Coord C2 exon
chr1:111730753-111730992
Length
331 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
GGCCTTTATATCTCCTGCAGCTG
3' ss Score
8.86
Exon sequences
Seq C1 exon
GTTGGTGATGAAAAAGACATCCTGCCACCGAAGCTTCAGGATGACATCTTAGACTCTCTTGGTCAGGGGATCAATGAGTTAAAGA
Seq A exon
GTAAGTCCTTACTCTTATTTTGGGTCTCTCCAGGCAGTGCAAGGGCATGCTTCTCAATCATTCCCTTCCAGAACTAAAATGAACTCATTCAGTAGTCCTAGACCAGCCCTAGAGGCCTAGAACCTAGGGCAAGTCTGAATTTGGGATTGTATTCTTCCTAAGCAATGGCAGAGAACTCATACCCAGATTCCCATCTCAGTCAGTAATTATGAACCCTACCCTATGGCTTTCCCCAGGAGCTTTCCGCCTGCAAGAAAGCCATTCTTGAAGGTGAGTTTGGGTAATTTCATCCTTCTGCTACCCTCTGAGATGGCCTTTATATCTCCTGCAG
Seq C2 exon
CTGCAGAACAAATCAACGAGCATGTTTCAGGCCCCTTTGTGCAGTTCTTTGTCAAGATTGTGGGCCATTATGCTTCCTATATCAAGCGGGAGGCAAATGGGCAAGGCCACTTCCAAGAAAGATCCTTCTGTAAGGCTCTGACCTCCAAGACCAACCGCCGATTTGTGAAGAAGTTTGTGAAGACACAGCTCTTCTCACTTTTCATCCAGGAAGCCGAGAAGAGCAAGAATCCTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162777-DENND2D:NM_024901:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0345514=dDENN=WD(100=84.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTGATGAAAAAGACATCCTGC
R:
AGGATTCTTGCTCTTCTCGGC
Band lengths:
318-649
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)