BtaINT0048712 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77244668-77245203:+
Coord C1 exon
chr15:77244668-77244936
Coord A exon
chr15:77244937-77245102
Coord C2 exon
chr15:77245103-77245203
Length
166 bp
Sequences
Splice sites
5' ss Seq
CGAGTATGT
5' ss Score
6.61
3' ss Seq
ACGTGGTCGCCTGCCTGCAGCCA
3' ss Score
6.63
Exon sequences
Seq C1 exon
CCTGGGAAAAGGAAAGCCTGCGGTCCTGCCGGCCCCTGGCCCCTGACCCTGAGCCTCCCGTGCCCACAGGCTGCGCTGCAGGTGGGCGGGCACGGCGAGCGGCTGACGCAGTGCCGAGAGGTGCTGCTCACCACGTCCAAAGCCATCCCGGTGCAGGTGGACGGTGAGCCCTGCAAGCTCGCAGCCTCGCGCATCCGCATTGCCCTGCGCAACCAGGCCACCATGGTGCAGAAGGCCAAGCGGCGGAGCGCCGCCCCCCTGCACAGCGA
Seq A exon
GTATGTCCCCCCGCCCCGCCCACATGCCCTGGGCCCCAGAAACTGTGCCCCTCCCCAGCCTCAGTTTTTCCCTCTGGGAAGGAGGCTAACAGTACCCCGGGGCAGCTGGGGCGGGGGGCGGTACATGAGGGCCCTTGCCGAGCGCCACGTGGTCGCCTGCCTGCAG
Seq C2 exon
CCAGCAGCCGGTGCCGGAGCAGCTGCGAGTCCAGGTGAGCAGGGTCAGCATGCACGACTACGAGGCCCTGCACTACGACAAGGAGCAGCTCAAAGAGGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636:ENSBTAT00000018128:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=0.286
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=WD(100=43.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACCACGTCCAAAGCCATC
R:
GCCTCTTTGAGCTGCTCCTTG
Band lengths:
242-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development