GgaINT0054699 @ galGal3
Intron Retention
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25816155-25816744:-
Coord C1 exon
chr5:25816545-25816744
Coord A exon
chr5:25816256-25816544
Coord C2 exon
chr5:25816155-25816255
Length
289 bp
Sequences
Splice sites
5' ss Seq
CGAGTAGGT
5' ss Score
5.76
3' ss Seq
TCCCTCTTTATGGCATGCAGCCA
3' ss Score
4.23
Exon sequences
Seq C1 exon
GCTGCTTTGCAGGTGGGTGGCCACGGGGAGAGGCTGTGCCAGTGCCGGCAGGTGGTTCTCACCACGTCGAAGGCCATCCCCATGCAGGTAGATGGGGAGCCCTGCAAGCTGGCAGCTTCCTGCATCCACATCTCCCTGCGCAACCAAGCCAACATGGTGCAGAAGACCAAACGGCGCAACTCCATGCCTCTGCTCAACGA
Seq A exon
GTAGGTTCCTCAGATCAGTCTGTCATCTCCTCTCCAAAGCGGAAGGGGTAGATGGAGAAGGGGAGGGACTGATCTGTCTCTCCTAGAAGCATTTTGGTCCACTCAAGGCGGAGCTGGGAAGGGCCTAGGCTGCAGAAGTGTGGCTAGAGCCTCATACTGGAGAAGCTGCTAGTGGCAATCTCCCCACTCCGCCCTGGGCTTTTGCCCGTATTGGAGGAGTAAGGTGCATAAGGAGAAAGTGGGTTATCACCTTCTGATCCCTTCTCTTTTCCCTCTTTATGGCATGCAG
Seq C2 exon
CCAGCAGCCAGTGCCTGAGCGGCTGCGAATCCGAGTGAGCCGAATCAGCATGCGCGACTACGAGGCACTGCACTATGACAAGGAAAAGCTGAAGGAAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380:ENSGALT00000038374:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=NA C2=0.086
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=PD(20.9=49.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGCAGGTGGGTGGCC
R:
AGGCTTCCTTCAGCTTTTCCT
Band lengths:
297-586
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]