MmuINT0048917 @ mm9
Intron Retention
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91777211-91777794:-
Coord C1 exon
chr2:91777595-91777794
Coord A exon
chr2:91777312-91777594
Coord C2 exon
chr2:91777211-91777311
Length
283 bp
Sequences
Splice sites
5' ss Seq
CGAGTAGGT
5' ss Score
5.76
3' ss Seq
TCATTGGCTCCACCCTACAGCCA
3' ss Score
6.58
Exon sequences
Seq C1 exon
GCAGCACTGCAGGTGGGTGGGCACGGCGAGCGATTGACGCAGTGCCGAGAAGTGCTGCTCACCACTGCCAAGGCCATCCCTGTGCAGGTGGACGGTGAGCCCTGCAAGCTTTCAGCATCACGGATTCGAATTGCCCTGCGCAACCAGGCCACTATGGTGCAGAAGGCCAAGCGCCGGAGTACTGCCCCACTGCACAGCGA
Seq A exon
GTAGGTTCTGTGTAGGCCACAGTGCTGGGGCCCGGGCCCAGGCTCCGCCTTACCAGAGCTTTAGTTTACTGACCTGCAAAGAGGGACTTGTAGTCTGGTTATATGGCTCAGTGAGAGCCCTTGGTTAGCATGGATAAGCCCTTAGGTCCTCTGGCATCCTAAGTGAGGGGTTTTGGGAGGGAGGCAGGATGCCCCTCTTAGGACCTGGCCCAGTACCCAGCTGAGGATCCAGATGCTAGGCAGGCTCCTTGCTGAGTTCCCTGTCATTGGCTCCACCCTACAG
Seq C2 exon
CCAGCAGCCAGTTCCTGAGCAGCTGAGGATCCAGGTGAGCAGGGTCAGTATGCACGACTACGAGGCTCTACATTATGACAAGGAGCAGCTCAAGGAAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-Dgkz:NM_138306:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=NA C2=0.257
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=PD(20.9=49.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACTGCAGGTGGGTG
R:
TCCTTGAGCTGCTCCTTGTCA
Band lengths:
295-578
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: