HsaINT1010973 @ hg38
Intron Retention
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr11:46375432-46375951:+
Coord C1 exon
chr11:46375432-46375631
Coord A exon
chr11:46375632-46375850
Coord C2 exon
chr11:46375851-46375951
Length
219 bp
Sequences
Splice sites
5' ss Seq
CGAGTACGT
5' ss Score
7.42
3' ss Seq
TTGCCGGCCCTGCCCGACAGCCA
3' ss Score
6.55
Exon sequences
Seq C1 exon
GCCGCGCTGCAGGTGGGCGGACACGGCGAGCGGCTGACGCAGTGTCGCGAGGTGGTGCTCACCACATCCAAGGCCATCCCGGTGCAGGTGGATGGCGAGCCCTGCAAGCTTGCAGCCTCACGCATCCGCATCGCCCTGCGCAACCAGGCCACCATGGTGCAGAAGGCCAAGCGGCGGAGCGCCGCCCCCCTGCACAGCGA
Seq A exon
GTACGTCCCACCCTGCCACGTGCCCTGGGTGCCAAGGCCAGACCCTGCCCTCTCTGGGCCTTGATTTCCCCATCTGTAAAAGGGGCTGACTGTCCCTCTGCCCCAGGGGTGTTGGGAGTGGAGCGGGACCTTCTCTCGGCAAGTGGTTTGGTGCCAGGCCGAGGGTGGCACCAAGGCAGGGCCCTTGCTGAGCCCCCGCTTGCCGGCCCTGCCCGACAG
Seq C2 exon
CCAGCAGCCGGTGCCAGAGCAGTTGCGCATCCAGGTGAGTCGCGTCAGCATGCACGACTATGAGGCCCTGCACTACGACAAGGAGCAGCTCAAGGAGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091:ENST00000343674:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.195 A=NA C2=0.262
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=PD(20.9=49.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGTCGCGAGGTGGTG
R:
GCCTCCTTGAGCTGCTCCTT
Band lengths:
260-479
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains