RnoINT0047103 @ rn6
Intron Retention
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80848278-80848839:-
Coord C1 exon
chr3:80848640-80848839
Coord A exon
chr3:80848379-80848639
Coord C2 exon
chr3:80848278-80848378
Length
261 bp
Sequences
Splice sites
5' ss Seq
CGAGTAGGT
5' ss Score
5.76
3' ss Seq
TCATTGGCCCTGCCCTGCAGTCA
3' ss Score
6.97
Exon sequences
Seq C1 exon
GCCGCATTGCAGGTGGGTGGACACGGCGAGCGGCTGACCCAGTGCCGAGAAGTGCTGCTCACCACTGCCAAGGCCATCCCTGTGCAGGTGGATGGTGAACCCTGCAAGCTTGCAGCATCGCGGATTCGAATTGCCCTGCGCAACCAGGCCACTATGGTGCAGAAGGCCAAGCGCCGGAGTACTGCCCCACTGCACAGCGA
Seq A exon
GTAGGTCCCATGTCAGCCACGGTGTCCAGGGCCCGGAGCCAGGCTCTGCTTTACTTGAGTTTTAGTTTATGACCTGCACAGGGGGACTCATAGTTTGGTTATGTGGCTCCGCGAGAGAGCCCTGCCTTAGCATGTATAAGGCCTTAGGTTGCTCTGGCATCCAAAGTAAAGGATGCCCCTTTTAGTACCTGTCCTGGTGCCCAGCCAAGGGTCGATATCCCAGGCCTTGCTGAGTCCCCTCTCATTGGCCCTGCCCTGCAG
Seq C2 exon
TCAGCAGCCAGTTCCTGAGCAGCTGAGGATCCAAGTGAGCAGGGTCAGCATGCACGACTACGAGGCTCTCCATTATGACAAGGAGCAGCTCAAGGAGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737:ENSRNOT00000024280:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=NA C2=0.257
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=PD(20.9=49.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGCAGGTGGGTGGACAC
R:
CTCCTTGAGCTGCTCCTTGTC
Band lengths:
293-554
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]