BtaINT0048725 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77240000-77240907:+
Coord C1 exon
chr15:77240000-77240068
Coord A exon
chr15:77240069-77240835
Coord C2 exon
chr15:77240836-77240907
Length
767 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CACCACCCTCTGCCTCCCAGGGC
3' ss Score
7.49
Exon sequences
Seq C1 exon
CCAACCTTCGTGCGGCACCACTGGGTACACCGGCGACGCCAGGACGGCAAGTGTCGGCACTGCGGGAAG
Seq A exon
GTGAGGCTCCACCCAAGCAAGCTGGCCCTGGTCCCGGCGACCCCCGCACCGCCACACATGGCCCGTCCGTCCCTGACTGTGGGCAGAGTCCTGGGCCCACTCTCTCTGTCTGCCGTGCCCGCTCAGTCCCAGAACGCCCAGGTCCCTGGGCAGAGCGGGAGAGCAGGGAGGAACGCCTCTCCTCCAAGAGCAGTGTGTCTGGACCGCTTGGAAGCTGTGAGCAAGCCCTTCAAGAAGCATGGAGGCTTTTTCCATCGCTAGCTCAGCCAGTGCACATTGAGGGCCCACTGGGTGCGAGCACAGCCCACAGCAGCCCAGGTTTCACTGACCCGTCTTGTCCCCCCCGCCCACCCCCCAGTAAGTTCAGAATCAGAGAGATCTAGGGGCCTTGTCCCTTCTCCCTCCATCTACCCTGAGTGTCCAGCACGTTGGGCACAGTAGACCCTGCGATAAACCAGTGTAGGACGAACAGGGAATGACTGTGATGGTTACTGCACAGAGCTTTGAGAGCCTGGGTTGGGAAGGAGGGACTGGAGTTAGGCAGGAGTTATCTATGGACCCCTTTCCAGCAGATGGTGCAGTTAACTTCAGAGACCCAGCCTGGCTCAGCACCCATGACTTCAGGGACTCCTTTTATAGTTCTTTTCTTTAAAAAAAAAATAAGAGTGCTCAGTTGCCCTGGGCAGAGAGATGTTGACGGCAGGAAGGGGCTGGGCCTGCTGCTCTGGGCCCAGCCCCAGGGACCCTCACCACCCTCTGCCTCCCAG
Seq C2 exon
GGCTTCCAGCAGAAGTTCACCTTCCACAGCAAGGAGATCGTGGCCATCAGCTGCTCCTGGTGCAAGCAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636:ENSBTAT00000018128:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(28.3=73.9)
A:
NA
C2:
PF0013017=C1_1=FE(38.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development