GgaINT0054685 @ galGal3
Intron Retention
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25821781-25822382:-
Coord C1 exon
chr5:25822314-25822382
Coord A exon
chr5:25821853-25822313
Coord C2 exon
chr5:25821781-25821852
Length
461 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TCTTATCCTTCCCTCTGCAGGGT
3' ss Score
12.63
Exon sequences
Seq C1 exon
CCCATAGTTGTCCGGCATCACTGGGTGCATCGGAGGCGACAGGAGGGGAAATGCCGGCAGTGCGGCAAG
Seq A exon
GTGAGAGGACATCTTGGTGTGTTTTTCCTCAGCCTGAGGAAAGGGGAGCTAAGGTCAAACAAGGGGCAATAGCAGGACTGGGAAGTAGAAGAATTCCTGCCTGACATACCACTATTCCTGCTAGGCAGGAGCAGCCTGTGGCAAAACCAAGACTCGTGGCCTGCTTCACACAGTGAAGCACTACATAAGTGCTACTCATACAAAGCTGTTCTCCCGCTGGGCCCCATCAGTCCTAGAGGGGACTGTCTTCCTGACACACTGTCTCTAGGCAATAGAGATGCTCGTGCAAAGAGCACAGCAACCTCCCTGGTGCTGCAGGGTGGTGGCTGGGGCTATCTGACAGGGATCTAGAGGGCTCCAGCTGCAGGCATGTTCTCTTTGTTTATGTATCTGGGAAAGTCCTGCTGGACAGCACAAAGCTGAAAGGGAATTCCCTAAGCCTCTTATCCTTCCCTCTGCAG
Seq C2 exon
GGTTTCCAGCAGAAGTTTGCCTTCCACAGTAAGGAGATTGTAGCCATCAGCTGTTCATGGTGCAAGCAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380:ENSGALT00000038374:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(28.3=73.9)
A:
NA
C2:
PF0013017=C1_1=FE(38.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]