HsaINT1010985 @ hg38
Intron Retention
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr11:46369941-46371384:+
Coord C1 exon
chr11:46369941-46370009
Coord A exon
chr11:46370010-46371312
Coord C2 exon
chr11:46371313-46371384
Length
1303 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TCCATCCTGTCTACCCTCAGGGA
3' ss Score
11.02
Exon sequences
Seq C1 exon
CCAACCTTTGTACGGCACCACTGGGTACACAGACGACGCCAGGACGGCAAGTGTCGGCACTGTGGGAAG
Seq A exon
GTGAGAGGCCCTGCCCGAGGACATCGCCACCTGCACCTGCGGTCCTGAGCCCAGGCCATGTGGCCGGTGTGGCCTGCCGATCACTGACCACACCCTGGTGTGCAGAGTCCGGGGCTGACCCTCAGCCTGGCTGCAGTGCCTTCAGTTCTCAAGCACCCTGGCCTGCTCTTGGTCTCTGGGCTTAGTAGGAGAGCAGGGAGGAAAGTTTTCTTCCCATGTGGCACACCTGGCCTGCTTTGAAGCTGCAAGTGGCCCTTTGGAGAATCGTATAGACTTACTCATTCGGTGACTCCATGGATACTTGTGTGCCGAGCGCCAAGCTGGGCAGCGGTTTCCCACCCTCCTGAGGACAGTGTGGCTTGAAGCCAGGCTTTCCAGGCGACCGCCTAACCCAGTCCACAGTTGTTTGGTTCACTTTCTTGTTTGCTTCTTGCCCGCCTCCCTCAGTAAGTGCAGGCTCTCAAAGATGGAGAGGCTTGCTTCACTGATTCTCAGCGCCTGGCCCACTGCAGGCCTTTCATAACAGCCTGTGTGATGAACAGGGAATGAATGTGATAGGTACTCGGAAGCGGCAGTAAATTTCTTTAACAGCACATGGGGGTCTGGTCAGGCCTCGGGGGTAGGAAGGAGGGAAAATCCGAGTGAGGCAGGAGTTAGCCTGCAGTGTGGCAGAACGGGTATGCATGTGGTGCCGTGCAGGTAACTTCAGGGAGTCAGGGGGCCCGGGCTAAGCCACCCTGCTCTTCAGGCTTATCTTATACATATTTTTTTTTATTTTAAAAAATGTGTTCAGACTGGGTGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATCACCTGAGGTCAGGAATTCGAGACCAGCCTGGCTAACATGGTGAAACCCTGTCTCTACTGAAAATACAAAAAATTAGCTGGGCGTAGTGGTGGGCGCCTGTAATCCCGGCCACTCAGGAGGCTGAGACAAGAGAATCGCTTGAACCTGGAAGGTGGAGGTTGCAGTGAGCCAAGATCACGCCACTGCACTCCAGCCTGGGCAACAAGAGCGAGACTCCATCTCCAAACAAAAACAAAAAATGTGTTCAAAGCTGGGCATGGTGGCACATGCCTGTTGTTCCCAGTTACTTGGGGGGGCTGAGGCAGATTGCTTAAGCCCAGGAGTTTGAGACCAGCCTGGGCAACATAGCGAGGCCCTGTCTCTGGGTGGAGAGAGGCTGGCACCAGGAGAGGGGCTGGGTCTGCTGCTCCACGCCTGCCCTGGTTCCCATCCATCCTGTCTACCCTCAG
Seq C2 exon
GGATTCCAGCAGAAGTTCACCTTCCACAGCAAGGAGATTGTGGCCATCAGCTGCTCGTGGTGCAAGCAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091:ENST00000343674:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(28.3=73.9)
A:
NA
C2:
PF0013017=C1_1=FE(53.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains