DreINT0056563 @ danRer10
Intron Retention
Gene
ENSDARG00000014439 | dgkza
Description
diacylglycerol kinase, zeta a [Source:ZFIN;Acc:ZDB-GENE-111104-3]
Coordinates
chr7:38817475-38817732:+
Coord C1 exon
chr7:38817475-38817543
Coord A exon
chr7:38817544-38817660
Coord C2 exon
chr7:38817661-38817732
Length
117 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
AGTCTAATATCCACTTACAGGGG
3' ss Score
6.3
Exon sequences
Seq C1 exon
CCTGCAATAGTGCGACACCACTGGGTCCATCGGAGAAGACAAGAGGGCAAATGCAAACAGTGTGGAAAG
Seq A exon
GTGAGTAAAATCACAAAAGTATTCACACTATATTTATGAGAAATGACATGTATTATGTGTTAAAGGACTATTGAATGACGTTTTAAGTTCATAATGGAGTCTAATATCCACTTACAG
Seq C2 exon
GGGTTTCAGCAGAAATTTGCCTTTCACAGTAAAGAGATTGTAGCCATCAGCTGCTCCTGGTGCAAACAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014439:ENSDART00000093009:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(28.3=73.9)
A:
NA
C2:
PF0013017=C1_1=FE(38.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATAGTGCGACACCACTGG
R:
TGCTTGTTTGCACCAGGAGC
Band lengths:
138-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]