MmuINT0048930 @ mm9
Intron Retention
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91781122-91782515:-
Coord C1 exon
chr2:91782447-91782515
Coord A exon
chr2:91781194-91782446
Coord C2 exon
chr2:91781122-91781193
Length
1253 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GCCACCCTGTCCTCCCTCAGGGC
3' ss Score
10.36
Exon sequences
Seq C1 exon
CCAACCTTCGTAAGACACCACTGGGTCCACAGACGACGCCAGGATGGCAAGTGTCGGCACTGTGGGAAG
Seq A exon
GTAAGGGCGCGGCCTGAGGGCACCAGATTCACGCTGCCCACTGGTCCTGTGGCTTCAGTGTGGTCACTGACAGTAGCTCTTGAATGGAGTGTCGGGTTTATTGTCACTCATTCAGTCCCTAAGCCTCCTGGCTGTGCCTTTGGTCTCTGAGTTAAGCAAGGGCATGAATTATTTTCTTCTGACTTAGTGACCCTTTGAGAGCCTTATGGCCTTTCACAACTCAGTTCAGGAGCTACTCAGGGAGTGTCAAGTGTGAAGCCCTGAGTCTGGCGGCAGGCCCCTGCCTCCTAGGACAGCGGCTTGTGCACTGCTCAGTACTGGTGCTTGCTCGCCTGTCACCTGCTTGTCTGTCTCCCTCAGACAGCCTCTCAAGAATGCAGGGGCTTGCTGGGCATGGTGGCGCACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTATAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACTAAAAAAAAAAAAAGAAAAAAAAGAAAAAAAAAGAATGCAGGGGCTCATTCTTCCATGGTTTTCCTGTGCCCTACATATAGTAGCCCTTGATAATGATTTCCTGACAGGGCATGGATATATCAGGACACTAAGTAGTCAACTTACTTTAACTTACAGACCTTGAATGGGCCTGTCTAGATCTGGGGGCAGAAGGAAACCTGAGTTAGGCAGATCTCCATTTTGTAGTCGGCTACAGCGCTCATGGGCTCCTAGCAAAGCCTCCCTGCCCTTGGGGCCCTGCCCAGTGTCTTTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATGCGCCTGCCTCTGCTTCTCAAGTGCTGGGATTAAAGGTGTGCGCCACCACTTCCCTGGGTATATTATTTTTTAAAATGTGCTTGGTTGGGGCCAGAGAAATGACTCAGTGGTTAAGAATACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCCAATGCCCTCTTCTCGTGTGTCTGAAGACAGCTACAGTGTGCTCATATACATAAAATAAATAAATCTTTTTTTTTTAAAGAATGTGCTTGGTTTTCCTGGGTGATGAAAGGTTGGCAGCAGCATAGCTGGGTCTCGTAGGCTACCTTGTCCCCTAGCCACCCTGTCCTCCCTCAG
Seq C2 exon
GGCTTCCAGCAGAAGTTCACCTTCCACAGCAAGGAGATCGTAGCCATCAGCTGCTCCTGGTGCAAACAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-Dgkz:NM_138306:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(28.3=73.9)
A:
NA
C2:
PF0013017=C1_1=FE(38.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: