BtaINT0049360 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006531 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr13:47063878-47067109:+
Coord C1 exon
chr13:47063878-47064003
Coord A exon
chr13:47064004-47066899
Coord C2 exon
chr13:47066900-47067109
Length
2896 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TAACTGCCTCTGTCCCACAGATA
3' ss Score
10.4
Exon sequences
Seq C1 exon
ACGTCCATACAGAAGCTGTCCAGGCTGCGCTCGCTAAACACAAAGAAAGGAAGATGGCAGTGCCTATGCCTTCCAAACGCAGGTCCTTGGTTGTGCAGACCTCGATGGACGCCTACACACCCCCAG
Seq A exon
GTGAGCAGCAGGCCTTGTTGGCTTCAGAGAGGGATGAGCAAGCCTTAGAATTAGGTTAGTGCCAGCAACTGCAGTCTCTTTAGCTTTCAAAATCATGGTGCTATAATTCAGGCTTTTAAGAACCAGAAGTCCAGAAACAGTGTATATGCTCTAAATAAAACTCGGAAGGAAAATTGGCATGATTATGTATGCATTATAATGTCTATGTAAATATGCATTTTAAGATTTTAGACGCATAAATATGATACAGACTTTTGTTAAAGTCCTATAAAATTGAATTCTTCACACAGCAAGAGAAGTTGGATTTCTTCTCTGCTTAGACTGGTGTATGCATATTCTCAAGTCTTCAAACTATCAGTAGGTTGTAATGTTCTGTTAAGAAATTGAATGAATTGAAAAATTTAGGCAGTTACTTCCCTGGTAGCTCAGTTGGTAAAGAATCTGCATGCAATGCAGGAGACCCTGGTTCGAGCCCTGGGTTGGGAGGATCCCCTGTAGAAGGGAAAGGCTACCCACTCCAGTATTCTGGCCTGGAGAATTCCATGGATTGTCTAGTCTATGGGGTCGCAAAGAGTCGGACACGACTGAGCGACTTTCACTTTCAGGCAGTTACTTAAATCTGGTGACATCAGTTTTTGCTGTAAAGTGCAGATAGTATTTTTGGGTATCACAGTTGCTTGCTTTGCCATTGAGTTACTAAAGCTGCCAAGGGCAGCATATCAGTGAGAGACGTAGCTCTGTGCCAATAAAACTTTGTCATGAAAATAGGCAGAGAGTTTGGTCCACAGGTCTGTCTACCCCTGATATATATGGTTGAAGGTAATACCCCATTTATATTTCTGCTTTTGTTTAATCTTGAGTTTTATGTAACTACCTAATATCTCTACTTAACTCTGTGCAAATAATTATAATCTATAACATGTGGCACTAGAGGTAAAGAACCCGCCTGCCAATGAAGGAGACACAAGAGATGTGGGTTCAATCCCTGGGTTGGGAAGATCTCCTGGAGGAGGGCATGGCAACCTACTCCAGTGTTCTTGTGGCGAATCCCATGAACAGAGGAGCCTGGAGGGCTACAGCCCATAGGGTTGCAGAGTTGGTCACGGCTGAAGCGACTTAGCACGCACATACGCACGCACGTTATTATCTTCAAAACTGAAGTGAAGCACAAAATTAAATGTCCACGTGTCTGTTAGAAACACAAAGTATTGAGCCTAATTTACTTGATTTTGTACGTATGTATGTATGTATGTTTGTGTGTGTGTGTTTCTTGTTCCAGCATTATTCATGGTGTGGTTGCCACTCTCTTTTCTGCAGACCTGTTACCTGGCACACCCCTTTGTTCACAAGAGAAATTTAAGGTGGAATAAGAATAGTTGAATATATAAAGCACTTTTTGGAGTCTTGTAAAGTTTAGTCCTGAGTGTTTGCAAGCAGTGAGGGTAATAGAAGCACGTACTTCAGCTTAGGGATGTGATCAGGTATGTCCGGTACTAATTCAGACCACTCTTCAACTTCTCATGCCTTCAGAAATGAAAGTTCTGAACTTTGTAAGACAAAATTTAAATATAAAACTTAGTTATTTTGTGTTTTCTTAAAAGATAATACAAGAAATGTTCTTTATCTCAAGAATAGAATTTTCTAATAGGAAAGGGAGTCCTTTTTGCTGATTTCCTTACATTCCTTCATTTCTTAATTCTGAGCCATAACATGTAATTTGAACTGTTTTTAAATCAGCACGGGATTCACTGATGGCTCAGATGGCTAGGAATCTGCCTACAATGCAGGAGACCCGGGTTCAGTCCCTGTGTCGGGAAGATCTCCTGGAGAAGGGAATGGCAACTCACTGCAGTATTCATTCTTGCCTGGAGAATTCATGAACAAAGAATCCTGGTGGGCTACAGTCCATGGGGTTGCAAAGAGTCAGACACAACCATAATTAGTATACTTAATCCTATTTGTTTAGTTTGTGGTTATAATTTGCCAAAATACGAATGTGAAAATTTTACTTTTGTATGTGTATAACAAACAGAACGGATTTACATGGATAACAAACCCACTTCAAATATATTTTAACCAGATCTTTGAAACTAGACAATATTCAGGGAGTTGGACATTTTTCTGAGCCACTTTTTATGGGAAATACTGAGTCTGAAGTACAAGGTGTGTGTGATTTATTTGTGTGTGCACTTTTCTTTATGTTGACTCCATCCTCTGGGGTGTTACTGTGTCATTCATGATGAAAGACAGAACTTCCAGGAGAACAAATCCTGTACAAGTGTCTTTGCAAAATATAAAAGAACATTATTGGAAATGTCATTTTTGGTGCATTTAATTGTTTGGTTAGCATTTTCAGGTATACTGTATAATACATCTTGTAAGCTGTCATTTAGAGTCTTGAGATAGTTTTGTACAATCATAAATGCCAACACTATCATTATAAAATTTTTTATTCACAACCTGCCACACTCACACACAACTTAAAATAGCATATGGCTCAGAGAAATACTTTGAATAAAGAAGGGCTACAGAGCATCACACTTTGAACACTTTAAAGCTTAGTGTCTTAGAAAATGCCACCATGGCCTTCTTGCTTGGTGTCTGAGTGCACAGAAAAACATCTGGTTATCCCCAGCGTCTGGAGTGGAGGACAGGTGAGGATGTCTTTGAGTTTGGAATTTTAAGAAGATTCTGGCATATATATGTAAGGTAAGGTGCTCTGGATGAAGACCTTGCTATACTGAAAAATAATTTGTCACCTGAAAAGCTTGTGACTTCTCAGGAGTGTTCGAAGGTCATTTACCAGTTAGTGTGTGGGGTGGGTCTGTGTTTGGAGAGGGCCTGGGCCTGGGAGTGCTGCTTGCCCCAGTTGCAGCTAACTGCCTCTGTCCCACAG
Seq C2 exon
ATACCTCCTCTGGCTCAGAAGACGAAGGCTCGGTCCAGGGTGACTCGCAGGGGACTCCCACATCCAGCCAGGGCAGCATCAACATGGAGCACTGGATCAGCCAGGCCATCCACGGCTCCACCACCTCCACCACCTCGTCGTCTTCCACCCAGAGTGGGGGCAGCGGTGCTGCCCACAGGCTGGCTGACGTCCTGGCGCAGACACACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006531:ENSBTAT00000015282:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PD(32.6=69.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development