GgaINT0100224 @ galGal3
Intron Retention
Gene
ENSGALG00000006652 | DIP2C
Description
NA
Coordinates
chr2:9965568-9966648:-
Coord C1 exon
chr2:9966523-9966648
Coord A exon
chr2:9965778-9966522
Coord C2 exon
chr2:9965568-9965777
Length
745 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
3' ss Seq
AGGCTATTTTTAATTATTAGATA
3' ss Score
3.64
Exon sequences
Seq C1 exon
ATGTCCACACAGAAGCAGTTCAGGCAGCCCTTGCTAAACATAAAGAAAGAAAAATGGCAGTCCCCATGCCCTCAAAACGGCGTTCGTTGGTGGTGCAAACATCAATGGATGCCTATACACCTCCAG
Seq A exon
GTGAACATTTTTGTTTGTGTATTTTATGAAAAATCTTTAGACACTTCTTTTAGTTCCTATGAACTAATAACATAGTTGCATAGATAGCAATAAAATGTTGTCCAGAACACAGTGAGCATAACATTGAGGTATGTTTGAAGAGGAGAAGAGGAAAAGTCAACGGAGGCACTTTCTATGACTGCTTTGCCCTTGATGTTACCTGAACTAACATAAGTTTTTTTGAACTTACGAGACACTAACTATGGCAAACTTGTAATGTAATACGTGGGTAATGTATCTTGCATGTTTCTGGTTTATTCCTTAACAGTTACCTTTAAAATTTGTTGTACCACCTCTCTTTGAATTTACTACATTGCCGGAATCAGCTGGGACTCAATTTCTTACTGATGGGTGGGCTTTTTACAGACTCTGGGGTGATCTTGGGAAGCGTTCTCTATTGTTAATATGCAGGTGGAGATCTGCAGAAGATCTCAAGTTGCATGATAAAGGAAGGAACTTTATTTTTGTAGGATAATACACGAGCCATGGTGTTAGTGTGGGAAAGCTCTCCATGCACAGTTCGCAATTGACTTTAATTTCAGGATTCTCAGTATTACAGTCTTTTCTCACTTTGTTTGCCTTGTTTGCCTGCCTTCACAAGTTTTTCTTAATGGCAGTTTTCTTTGAATTTGTGACACAAATGTGCCTTATTTCTAGTTCAAACTAATAAAAGCACGGTAAGTAACAGGCTATTTTTAATTATTAG
Seq C2 exon
ATACTTCTTCTGGATCAGAAGATGAAGGCTCTGTGCAGGGTGACTCCCAGGGAACTCCTACCTCGAGTCAGGGGAGTATCAACATGGAACATTGGATCAGTCAAGCAATCCATGGCTCTACCACGTCAACCACTTCCTCCTCCTCAACACAAAGTGGAGGCAGTGGAGCTGCACACAGACTAGCTGATGTTATGGCTCAAACACATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006652:ENSGALT00000010760:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PD(44.8=69.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCACACAGAAGCAGTTCA
R:
ATATGTGTTTGAGCCATAACATCAGC
Band lengths:
334-1079
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]