RnoINT0047798 @ rn6
Intron Retention
Gene
ENSRNOG00000015288 | Dip2c
Description
disco-interacting protein 2 homolog C [Source:RGD Symbol;Acc:1560155]
Coordinates
chr17:63675588-63679093:+
Coord C1 exon
chr17:63675588-63675713
Coord A exon
chr17:63675714-63678883
Coord C2 exon
chr17:63678884-63679093
Length
3170 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AAATCTCTTCTTGAAAACAGATA
3' ss Score
3.42
Exon sequences
Seq C1 exon
ATGTTCATACAGAAGCTGTCCAGGCAGCTCTTGCTAAACACAAAGAAAGGAAGATGGCAGTCCCCATGCCTTCCAAACGAAGATCCCTGGTTGTACAGACCTCCATGGATGCCTACACTCCCCCAG
Seq A exon
GTGAGCAACAACCTCAGTATTTCTGCTTCTTAAATGTGTGCTCCATCTGCCTGGGAATTAGTTGATAACTGTCTGAGCAACAGCAGTCTGAAATGTTTAAAGTCAGCATTCAAAACAGTGGGTCTCATCACAGCGTTTTCACATGTACATTGTTCTTCTCAACCGACCCAGTGTCCTCCTATCCCCCTACGCCTCTTCACCCCTTTCATTCTCCCAGCTTATCACTCACTCCCTTTTACGTCACATATCCATTGCTCTTTCTTGTCCCCATCCCTTCAATACTTATCCTCTCCTCTTATAATCCTTTTCTTCTTTCATGCCCTAAAGACAGACAGACAGACAGACAGACAGACAGACACACACACACACACACACACACACACACACACACACACACACACACACACCCCTAGATTCTAAAGGCGGGTGGGAGCATGCAATGTTCCTCTCTGAGTAGTATGGTTTATTTCTTAACACAATGAACTCTCCTATTCTCTTGTAAATGTCACTATTTTATTGTTTTTTGCAGCTCAATAAAAGCCTATTGTATGTATCTAACCATGTAGTCTTTATTCACTCATTTCTTGACGAATATACACAAGTTGAACCTGGCTCTTGTGACTTGTGCAAGAGTGTCTGTAGTGAGCCCTTCAGGTATATGCCCAGGAGGTAACAATTTTGTGAATCACATTCTAAAAACAGCTTCTGAGTTTAACTTGTAAGGTGAAATTTTGACATCACTATGTTTGTACCTATATTATTAAGTATTTTAGACTTTTCATCAGAATTCAATTATAATTACTCAAAGTCTTATAAAAGTTTACTCAATTATTTATCCATACACAATATATATATAACGGAAGTTAGATAGATCTTAGATCTTTCTTCTGCTAGACAGGTGTGGGTGTGCATATTGTCAATTCTTTAAAACGCTAATATTACAGTATTGTAGAAGAAACCAAGTGAATTGGTCAATCAGTTGAGATGGTGTCCAGAAACAGGAGTCACTGGGTGTTACTTGTGGAGTGTGAGTAATTTAAATATAAATACAGTATTTTCTGTAGACTTTCACAATCGTCACCTCTGCTAATGTAGCATTAAAGCCGCCATTGTTGTATGACAGTGAGTGGAAGTACTGTATCCCAGTAAACGTTCACAAACAAAAAAGGCAGTAGACACGATTTGGTCCACAGACAAACTTAACTCTTCATCTAAAATGGTTGAAAGTAACGGCATGGTTACTTTTTTCCAAATTAGTGTGTTTTATGCGACTAGTAAAATAGTTGTTGTATGGTTTATTTTAAAAGGCTGACATATGTCACAGGAAAGTTAAGAAGCATGGTATTTGCTTGCCTGTGGTGAGGGCTTTCTAGGGTAGGTTACATCTTAGTACAGTGAGTGTACAAGGGAGAGAGCCCTTGGGAAGACAGAGAGTCAGAACTGGACTAATGTCACGTTTTATAACAGCACACTCCCACAGGAACTAAGAAGGTCCTGTGAAAACTCTTATTTCCATCTGGTAGCACTAAATCATTGTACCCAAAGAGCTCAGGAACCCATTTTTCAGTAATTGAGAATTTTGAAGGTTTTGTCATAGTTTCCTACCTACAAGAGATTACTCCATCTGTGAATAAAGACTCTTCTTTTTAGATTGAGGTGTTTATAATTTACTTTTATCAATTTGTTTCACTGGCTATAACCTTCTAACTAAGATTGACCAGAAGTTATAAGGATTTCTTTGTCTCATTCTCAGCCTTAAGAATACTTTTAATCATTTACTGCTAAATGTAATCCTAGGTGTGGATTTTTACTGATGGATTTTACAGTTTGAGGAAATTTCCCTTGTATTCCTAGTTAGTTTAATGTTTTTATCTTGATGTCATCAAATACTTGTGCTAAAGGATACCACATATTGCCATTCTTTTAGTGTATCAGTAACATTAATTCACCTTTAAATACTAACATTAACTTTAATTCTGGGTTTTAGTGTCCAGTTCTAGCCACCACTCAGTCACAGTGTATCATCCATCTTGTATGTTGCTTGTTTAGTTAACTAGTTTTGTGGAGGATTGACTAGAAAGGGGCATATGAAGAATTTCTGTTTAGAAGCTGGCACATGCTATTGATGTACTCATATAAGTACCTCTCAAAGTCTTAAAATATAAATTACAATGTTTACATTTCACTATATAAATGTTATATAAAATTATATGCTAAAGAGAATTTTAACAAAAAATGTAGAGAAATGGATAATGATAAAATAGTATAGCTATTGTTAATGGTGCTGTTTCTGTTCTTTCCTTTTAGATATTTCTGAGCTCTCTTGTTTATTATATCACCTAACTCATCTCTAGGTGGGATCCTAAGTCATTCTTACACTGCAGATTAGATACCAAACACTGTAGTCATTCATTCTTAACCCATTGTTGCTAACTGAATACATATTGAATGAAAACATATCTGTTAGTTTTCATGAATAATGTACATTTTCCTTAGCTTATCTCTCCTTTTCATATAGAAAGATAAACCAACTAAATAGGAGAACATTTTCTAGTAAATGAATGCTATAAAAGTGAGTAGATTTTATTGAGCATAAAATGTGATGTTATGAGTATGTACTGCGCTCTGGAGGCAGAGACAGCACAAAATGGTAAGATACTGGAGATGAAGATAAGGTGTGTGTACTTTAAGGATAGTTCTTCTTGAACTGCCATTTCTTCATTAAAAGCTTAACATTTGAGGAAACTTGTAGGTATGTTGTGCTTATTTTTAAGCCTAAAAATAAGTTACAGTTCAGAGTATTATTTTGAAGGACTCACAACAACATTCCTTGTAAACATATGGAAGCAGCTCAAGCATGTCTTAGAAAATGGTGCCCCATCCTGTAAATTCATGCATGTGTACAAAGAAGATACTGGTTTCTTCCCAAACATTTACACTGAGAATGTCAAGGCATCTTTCCTAGGTGCAGTGTCGAGATAAATTCTATAGCATACTTAAGGCATTTTGGTTATGAAACCTACTACATACAAAAATTGTACAAGAATGTTTGAAGCCAAACGCAATTATCCTGAAACAAGTCTCTTGGTAGAGTGTGGAAAGGGGCTGAGCCTGAGGTGTGGACATCTTTGCTATACTGCTTAACAAGTCAAATCTCTTCTTGAAAACAG
Seq C2 exon
ATACCTCTTCCGGTTCAGAAGATGAAGGCTCAGTGCAGGGTGATTCCCAGGGAACCCCCACTTCTAGCCAGGGCAGCATCAACATGGAGCATTGGATCAGTCAGGCCATCCATGGCTCTACCACATCAACAACCTCCTCCTCCTCCACTCAGAGTGGGGGCAGTGGGGCAGCACACCGGCTGGCAGATGTCATGGCCCAGACACACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015288:ENSRNOT00000020634:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PD(20.0=69.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]