GgaINT1011327 @ galGal4
Intron Retention
Gene
ENSGALG00000006139 | DIP2B
Description
disco-interacting protein 2 homolog B [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chrLGE22C19W28_E50C23:178042-179607:-
Coord C1 exon
chrLGE22C19W28_E50C23:179482-179607
Coord A exon
chrLGE22C19W28_E50C23:178255-179481
Coord C2 exon
chrLGE22C19W28_E50C23:178042-178254
Length
1227 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGG
5' ss Score
6.25
3' ss Seq
TCTTTTCTGCTTCCACACAGACA
3' ss Score
9.39
Exon sequences
Seq C1 exon
ATATCCACACAGAAGCAGTTCAAGCAGCACTGGCAAAACACAAAGAACAGAAAATGGCCCTCCCCATGCCCACAAAACGGCGATCTACATTTGTTCAGTCTCCAGCTGATGCCTGCACTCCTCCAG
Seq A exon
GTTAGGTTCTCACAGTGTGACTGTCTGTATGGATGTTAAGGTATGCATTTGTAACAGTTTCCAAATTAAGAGGTTACAGTTTTCAAAATGTACAAGATCTTCTGCAGGTTTGTGGGTAGCTGCTACTCCTTTAGGGCTCTTGCTACCTTTGCGCAGCTGTTTTCATGGAGCTGCTGTTGGGACAGAGAAAATGAGTCCTCTTCTGGGTGCTTTTAAAGAAACAATTGGCAGGAACTGAGCAGGCCTTCTGTACTGAGGCTTCTTTTGCTTCCCCCACACCTATTTCAGTAAAAACCCTCGTAATTAGGAATTCACATGAAACCACATTGTCAGGCTACTTCACCCATAACTGTTCTTTTACCCCCTTTTATCTTTGTTTCTTTTGAGTGCTTTTCCTGGTGTTTGTCCAGGTCTCAGCTTTACACTAGCTTGTCCAGTACAGCAGCAAATTCTGAGCTGTGGACACCACACAAATAAATGTTAGCATTCACTTAGCATCATCTGGAATCAGTCTTTTCCTCCAGCAAATAATCACTGTGAAGAACAGGTGAGTGTTTGTACATAGCACTGGACAGCTTAATGTGTCAAGTAATGAGTGTTTTATTCATGGTAGATTATTATTTTGCAACTTTAGGACAGACAAGATATCTGTTTGCATGGAAATGCAGGATGTGGTTCCTTTTGTGGTTTTTCTCTCCCCCCCCCACCCCCCCCCTTTTGTTTTGTTCTGTTTTCTGCCATTGAAAGGGACCCATTTAGAGTACCAGACAAAAGCATTTTCTGCATGTGGCCTTGGCACATTTGTTTCCCAGTGCCTGCATCCTGCTTTGTTGCTGTGAATTTTCACATTTGACAGAGATACTGACCCCTCACTTTCCATTTCAGAATTACCAGGGTTAGGCAATGCAGCATGTGATAACAGGATATGAATGGAAAAGTAATGAGACAGAATAAAACATGGAGAACCCTCAAGAAGGATACTTGCCTGTGTTGTATCTTTTACATGCAGTAAACAAGGGCAAAACACCAGGAGTAAATGTATTCACATTGGATATGTCTGCTGCTTTAACTTCGTTTTGGCCTATTGAACTTTGTTTGACACAGCCTGTGAAAAAAGATCTTCATATGACATGCCTGTGCCATTGATATGTGACTTGCAAGGAGAGCATGTTCAGTGCAATGTGCTTTTCCCTAAGCAGCTGGAGTTTCTTTTCTGCTTCCACACAG
Seq C2 exon
ACACGTCTTCCGCATCCGAGGATGAGGGGTCACTAAGGCGTCAAGCTGCTCTTTCTGCTGCATTGCATCAGAGCTTACAGAATGCTGAGTCTTGGATCAACCGATCTATTCAGGGGTCATCCACATCTTCATCAGCATCCTCTACACTTTCCCATGGAGAAGGCAAAGGGACCAGTGGGTCACTAGCTGATGTATTTGCCAATACTCGAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139:ENSGALT00000009909:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.889
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PD(24.2=69.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCACACAGAAGCAGTTCAAGC
R:
TGGCAAATACATCAGCTAGTGACC
Band lengths:
326-1553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]