RnoINT0047762 @ rn6
Intron Retention
Gene
ENSRNOG00000056106 | Dip2b
Description
disco-interacting protein 2 homolog B [Source:RGD Symbol;Acc:1305671]
Coordinates
chr7:141810404-141819451:+
Coord C1 exon
chr7:141810404-141810529
Coord A exon
chr7:141810530-141819238
Coord C2 exon
chr7:141819239-141819451
Length
8709 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
3' ss Seq
TTTTCTCTAATTCCACGCAGACA
3' ss Score
8.29
Exon sequences
Seq C1 exon
ATATCCACACGGAAGCAGTCCAAGCTGCTCTGGCGAAACACAAAGAACAGAAAATGGCTTTGCCCATGCCCACCAAGAGGCGGTCCACGTTTGTCCAGTCTCCTGCGGATGCCTGCACACCTCCGG
Seq A exon
GTAGGTGTATCTCCTTCCACTTTGACAGTCCTGGATGGGCATTTGGAAATACTCTTTTTCCTTCCCGAGGTGGGACCTGGAACTCCCCACACATCCAATGAACCCGAGGAGTGCTCTCTGAAGGGGGCTGGTGAGCACACTTACCAAGGCCCTTAAGACCTCTGCAGACTGCTGCCTTCTGAGCCTTGGCGCTGTGCCTACGATACTACACCACACTCGTGTAGTCAGTAAGCACAGGTGCAGGCCCCCTTTTGAGGAGATGGATGTTTTGTGTCTCCAAATGCGATCTGTAGTGATAGATTTAACCCATTAGTTTCCTCAATTGGTGTTTATTTCAGCAGCGAGTGTAGGAGTGGGCGAACTTGGGACAGAATTCTGTGTGCTGTTAGAGATTTAGGAGTATGATGATACAAATTTGAAATAGATCTGAAAAAAATAGATATTTGTTAATATATTTTTATATCTTTAAAGTGTTCTTTTTTATGTGAGGTCCAGAAGTAAGTGGGAAATAGATATCCCTCCCTCTCCACTTACCAGACTCAGAATTTATTCTTCCCAATGTAAATTAAAACTTCACATCCAAGGAACCTCGAGTTTCTTTTCTGTTCAGTTTTGGCAAATTTATACAAACAAACAAACAAACAATCTTATTTTTTTAACTCAAATAGCAGACACTATTTTTAAATGATTTGTTTATTTTTATTTGATGTGTGAATGTTTTGCTTGTGTGTATCTATATACATGCCTGGTGCTCTTGGAGGCCAGAAGAGGATAACAGGTGTCTTAGAGCCATAGTTACAAACTGTTGTAGTGCTGGGAACTGACCCAGGTTCCAGGTGGCACAGGCTCTTTGCACCTGCTGTGGCTTTGTCAAGTTTCCCTGGGGAGTCCTATGGTTGGTTTGCACGCACAGTTGCCATGCTGGGCTTTGCTCTTGGATCCATGCTTGTGTTCTCAGAGCCGTGGGTGAGCGGTGGGCTCATTAGCTGTGCGCTTCTTTCCCTTCACATTTGTGGTGTCAGTATGTTTGAAAGAGAACTAGCTCTGTGGCTTCAAGTGTTTCTCAAAATGTAACAAGGATACCTCTGGCAGACTAACACAATGAGGCATTTTGTGTCCATAGTGGTGCATACTTGAGGCCCACTCATTCAGAGTCTTGGATGGATTCCCTTCCACATTTGTGCAGTGTACAAGTTGGGTCCTTGGGCACAAAGGGGGCTCTCAGTCTGGTAGCCGTCAATGTTGGCAGATTCCCTACAGAATAGCTGGAGGTTCAGTTTCAGTAAATGGCAAAGGGCGGGGAGCAGTGTGACAGGCAGCCCTCTCCCAAGGGCTCTCCCTCTGTCAAGGCACCGTGGCTTCAGAGTAAATGGCTGCTCTCATGGCTCTGGCTTAGAAGGGAGAGCACATCAAAGAACTGGGAGAAGGCTCTCAAGGAATGGGGCCTGTTGGTCAGGACTTCATAGCAGTCACTGCCACAGGGAACTTAGCAACTCCCGAACCAAATCTCAGCTGCTCACTGTTGGATGAACCATAATCCTTTGCTGCAAGCCTCTGCATTTCTAAATATGCATGTTCTGTTCTTGTGGAACCTTCCAGAACTGTGTGCCATAGTGTTCTTGATCATATTATAGGTGTTAATAAATAATTTCATAACAAAGACACAGTCCTCTTCTCTAAGACCTGACTCAGCAAGGCAGAGTGGTCAGGCTTCCTGTCCCTTTTCCTTCTGTTCTAGGGGCTTCTGAATAAGATTCGAAACACCTACATATGCTATTAGGGACATCTCTAGTGCAAGTAGAAAATCTCTCCCATCAAGAGACGTTGCGGTTCCTCCCGGCAGTCTCACACAGCCCAGTGTTCTCGTTCAAATGTTCTGCATATATCCCAAGTACAAGTACTTTGCCTCCAGAGGGGAGGCGAGAGCCTGTACCTAAGGTTGGTCCTGGCTTTCTTCGTGTAGCACACTGATTGCCGTTCTTGGGGGGGTGGGGCCCTTTAATCCCAGCACTTGGTAGGCAGGAAGCGAAATCGTCCTGATTCTAGGCCAGCCTGGTCTACAGAGTGTTCAGACAGCCTGACCAGCAAGCAAATCCTGTCCTGAAAACAGACAAGTGCAAGCAAAAGTGCTTGGCTGCTCTTGCCCTTCTGCCAGTGAAGCCCACCTGCCGACATGTCCGCCAGACTCAGACCTCTAACTTGGCATTCAAAACACATTTTAATCTCTAGCTCCTTTTGCCTAGTCCCGAGGACCCAAGTTAAAATCCCTTATTCTCACCCCACGTTTGGAAGAGGGAAGGAAGGAGGGAAGGAGGGTCAGAGGAGGGGTAGGAAGTAGGAGGCGGAGAGGAGGAGGGAAAAGAGGAGATGCGCGGCCAGCAGCAATGATGGATTGTTGTCACTTGAACATGTAAGGTCAGTCTCGACGTGTATGCAGTGGTCAGAGCGTAGGCAGCGGGTGGCTCAACTGATTGTGGAATCCCAAGCTACATCCCAAAGGCTGGGTGCAGTGGTGCACGCTGTAACCCTAGCACTGTGTAAAGAGGAGGCAAGTAGGTTTCTAGGGCTCACTGGCCAACCAGTCACCAAACCTGTGTCAACCTCTGGCCTCCAAAGGCACACTCCTGCAAGCACACTCCCACACACACACACACACACACACACACACACACACACACACACATCTTAAGAGAACTTGTACTACATTTCGGCCTTTGATCTTTAAACATTGACTGTCAGCCCACACATCCATGTGCGGTGTTATGCGGAGCTCACTTCTGGGGCACACATCTCTCTGCTCTCCCTGTGGGAGGTGCACAGTCTACTGGATTACTAACCAGATGAAAATTCAGAGCTGCCTGATCAAAAGGTTTAAGGAGGAAAACCCCAGACATTTTGGCTTTATTTACAGTGTCACACAGTTTGGAAACAATGATAACAGTTGGCATGATTTATCTTTTTTTTATAAATGATTCTCAAATAAGACGTCAGTCAACCTAAAATGTGATTACTGACGCCTGCACTAAACTGCCGTGGATCAGAAAGTTCAAGTTTTCTAAGTGCGTAGTGACTCCTAGTGTTAGCACCTGTGGCCTTCCCTATCTTTTAGACTGCTTGAGTGACTGTGGTGCAGGTGTCTCATGCGCTGAGGTCATTTACTGATGTCATGAGGCGATGACTTCAGCTCTCTGTAGTCATCTTTGTGTAAGCCATTGCTCATCCATACAGGAGTGCAGACCCGCAGCACTAGCTCACTTATTTCTGTCTCTGAGCTTTTCTGCAGTCTGTGAGGTTATCGTTTGCTGCAGTGAGAGAGAGCAGGTGACCCCAAGTGGAGGGACGTGTGCTCTGACAAGGTCATACTTGCCAGTGACTGTGGTTATTCTTGGGACTGGATGACAAGGTTTTCCTCCATAATGTGTTTTTCCCACCCCATCCATCTCCTTCTCTGCATTTCTTTGCATGAAAATGGTGTCTGGGGCACACTGGGGCATGACTAGTTTTCATCCACCTCAGGGATGCTTTATGGGATTATGGTGTGGAGGACTTTCACCAAGACTGCCCTGCCAGACTCTGCTTCCTGTAAGTGTTTGCAAGATGGGAGAGCAGTTGTTCTGCAGATGGGAGATGGACAGATGCTCATCGTCAGTGGGTAGTGCTTAAGTCCTTATCAACCCTCAGTGTCACAGGCAGGAACCCCCTCTGACCTAATGGGTGTCTATATCTGCAGAGGGGTAGGCACTAAGTAGCCATCGCCTCCTCAGAGCTGCCATTCCATCACTTCAATGTTACCTGAAAGAGAATCCCTGGGCTGGAGGAGAGGCTCAGCAGGAAGCCCCAGTTCAGTCCCTAGCACCACACAACAGGTTTGGTAGCAGGAGAAATGAAGTGCTCTTCTGTGTGAAGTGCGTGCTTCACCTACTCCATGTCCAGGAGAGATGAGGCACTATTTTGTAGAGGTTCTTAGAGTGGACATTCATCCGTTGTGTCAATGCATGGTGGCTTACTTGCTCTCCCAAGCTACTGTCTAGACCTAATCTTGTCACCTGTTGAGTGAGCCCAACAGCAGGCTATCTTTTTCCTTTCTTCTTTTTAAAAGATGTTTACGATTTGTGTGCTTGAGGGCTTTGGCTACTTGTATGTATATGCACTGTGTCCTCCTAGAACTGGAGTTACAGACGACTGTGAGCTGCTGTGTGGGTGCTGGGAACTGAACCCTGGTCTTCTGGGAGAACATCAGTATTCTTAACTCCTGAGTCATGGCTCCAACTCTGGTGGGCGGTGTCCTCCAGAGCCTGCCACTCCCAGTGCTCCTCAGCGCATCTCTACTTTCAGGTGCTGTTTGTCTCGTTGTGTCCCTTTCCAGCCTTGTACATCTTTTCAAATCTCAAATTAAGTCTTTTTCAAATTTTGAAAAGCCTTTTCAAATTTATTTTTTTACAGATTTATTCAATTAAAGTTGACATAAAATAAGTAACTTTGGAGGGATAGCTGGTGCCGCGGCTCATCTTCACACACCTGAGCCTGCGACCTGTCCCTGAGCTTGAGCCGCAGCTAACGGCATGTCCTCCCTCGGGTGTGTGCTCTGCCATGTCGGGACACAGAAGCACAGTGACAAAAGTGCCCGTCTCTGCGTTCTCCTGAGCGCTTCATGATCCTCCCACCCGAGAGCCACTGCTGTGCTCTCCTTGTCTGCGCATTGGCTTGTGTTTTTCCAGACGTTTATGCAGTGGAGCCATGTGATTTTATTTTTTTTTTTCCACAGGTAGAGCAGGAGGGAAGGGCAGCTTTCGTTCACCCTGAGTACTTTGAAATTCTTCCATATTGCAGCCATCCCAGAAGGTAGCTCCTGGCTGAGTCAGACTCTACCACATGGGGAGACTATGGCTTATTCATCCATTTGTCTGTATTTCCACAGTGGGCTTGCTTCCTATTTTACGTCATTAAAGTGACATTCACTTACTAGTCTCTGCACACATACGAGCTTTGTTATTTGTTTTTTTTTTAATACCCAGGACTGCAATGAATAGCTAATATCACAAATGTTCGATTTTCTGGCTGTGTGACTGTCTAGATCTCTGGAGCGGGAGTAGAGACAGTTGTGGACGGCCATGTGGGTCCTGGGAATCAGACCTGGGTCCTGTGGAAGAGCATTCAGTGCCCTTAACTGCCAAGCCATCTCTCCAGCCCTATGTGTTCACCTTTTTAAAATAAACATTTTTAATATGTCCACATGACTAAAGTTGTAGCAGTTAAAAAAACGTAGTAAACCAGGGACTTTTCTTCTCTTAAAAACAATAAGCAAATCATTTCCATGTCTCCTAATTGATTACGTAGGCTTCTGATGAACACTGTCAGGTAGTGCCTGATAACTCACGTCACCCAGGCAAGCCATGCTTTTGGAATTATTCTCTGGGCTGGGGCTTAAGCTCAAGAGCAGCATGTGCTTGCCTAGCATGAAGCCTTAGGCTTAGTCCCTAGAACCACAGACAACAACAAAAACAAGAACCACTTGAGCTAAGTAGTAACTCCTACTGTATTCCCAGCACTCAGGAGGCAGGAGAACTGATTGTCATGAGTTCAAGGCCAAGGCCTACCTATCTAGAACTGCATAACAATACCCTGTATCCAAAAAACAAACACTGGGTCAGTGAGATGGCTGAGAGGTACTGGCATGAGCCTGGCCGGGCAGCCTGATGGCCAGGGCCCAGAGTGGAAGGGGAAACCAGCCCCAGCACACTGTTCTTCAACCCCCAGGGGTGTGCCCTGGCACATGCATGCCCCTACAGGTAAATTAGTGAATTAAAAAACATTTTTAATCAAATTTCTACAATTATTCCTGGTTGACAATTGTTTTTTTTTTTTTTAAAGCTACAAAAGAAAATATTTAAAGGAGCTCATTTTGTTTTTTTATAAAGTTGTGGGCTCAGACAAGTATGGTTGGCTATACTATAAACCCATGGGTGTGGAATATGAACTCAGGTCCTCTGACAGAAGTAAGTGCTTATTAATCGCCGAGCCATCTCTCCAGTGCCTTATTTAAGTTGTTATTAAGGAAAATAGCAAATATTATGTCAGACCAGAAAAACAGAATCCCCTTTCTGTCAGTGGCCCAGTGCTTGGGAAGGGCTAGTTTACGATTGTAGCTGCAAGCTGCCTGTTGGCCCCCAGTGGGGTGAGGAAGGTGTCCCCATGTTTGTTTAGATCCCTTGGCATCCGGTGCCTCTGCTGTTTGTCCTCATCACTGTCACTCTCAGTTTTGCCTGTGAGCTTCAGCTGGCTTCCATTTTGTTAATGTCCTCAGATGTGCCCTGTTTTCTGTCCCTACAACCTCTCTAATGTCCTCTCTACCTGATGCTGTCTGTCCTGCCTCTCAGCCAATCACTGCTTATGCTGCCAAGCAAAGGAACATGGACTCCTGCCAGGCTCCGAGCCCAGTGAAAGCAAGGCTGTGTCACGGGCTTCTCATTGCCCCATGGCTGGTATAGTGCTGGTCTATTGTTGAATGGATAAGCAGTCTTCACAATGAATCATTTTAACCTCAAGTTACAAGTAGAGTGGTGGGCCTCAGGGTTCAAATGAAAGAGAGGCACCAAAGCTGTGTTTCCCCCTAGCCTGTGCTGCTCCATAGCTGTAAGCATTAAACACCCAGAAGAGGGCTGGCAGGCAGGCAGGCAGGCAGGCAAAGCAGGTAATTGAATTGAAACACTACACCTAATTATATAATTGATCAAGTACAAGAACATAATGCAATTAGTTTTCCATAAATCCAATAATGAAAATTCTGGTTTTACTGTCTATAAAAATTGATTTATTTTGGTTTCAACTTACACAAATTAAAATGACACAGTAAGGGCAGCTGGTAGATCTAGAGGCCTTTGTGGGATCTGAGATGTCACCCAACATACATTGTTCTTGTGGTGAGAGTCACAAGTCTCACTGCTTCCCTGCCCCCACTTTCTTTTTTTCTTTTTTTTTTTTTTCCTTTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTTGCCCCCACTTTCTAATGGAGCTGAAATGTTAGAGTATTTTCTAGAAATGATTATGCTTTCTTTAAACACTGTTCTCTTATGTTTAGCTTTCCCCATTCCCTGTTATGTTATCCATCTTCTCCTTTAGGGAGTCTTCCTTTATCAACGAAATCTCTGGGTCTCCATCTGTCTCTGTCGTCTGTCTGTGTCTCCTTCCCTCCCTCTCTTCCTCCCGCCATCCCCCACCTCCCCCATCTCACAGCTCCTTAGACCCTGGGCCTAGACCCTGGGCCGGGATCAGTCCTCCTCCCTCAGAGGTCTCCACTCGGTCCAGTTCTCACAGCGGTGTTGTGTTCTAGTGTGGGGTTGTATATCACAGTGCCACACTGCGGTTTTTGAATGCCACATGCTGTCTCATAGGCGCTGGTACATGTGAGAACCACAGGACCTGACTTAGTCTCCAGCACAAGGTGCATTAGAAGCCATCACAATGCTTGCACTTTGGGTCTCCTTTGCCCGGAGGTGATGAGTTGCTGTAGGCCTGACAAGCAAAGGCTGTGTCTCTTCTGTGCTCAGAGCTTATAGATCAGATTGACAGATGCGGGATGACTGTGGTGGGTTTTCATTGTTTGTTTTGGTGTGGTTCTGGTCCCCATTGTAGAGCAATTTTCCTGCCTTCTCTAGCTCTTTGACGCACTGCCTGACCTGGACCCACTTATTCACCTGAATTAGGGAACATTTTCTACAAATCTGAACATAACCTTTTAAAGTTAAAAAACAGACAAACAAAATCTGGGGATGTTGTGTTTGGCTTACACCGTACGGAGTCCTAGCCTGCAATGACTCTGGCTTCTCCCCAGCTTTGGCCTCCCTGTATGTGGTCAGATTTTTCTAGGCAAGCTGTCCAAATTTAGGCCTGGTTCCTGAAGTCAGGCTGAAAGGCACTAGGGAATTGTCAGTCTTCTCCATGACTGCTGTGCTTAGAAACTTCGCCTTCTCGCTTTGACCAGCTCCTCAGCTACTAGAGCAGGCAATCCCTCAATTCCCCATCACCAGCCCTCATCAAAACTTTTCTTTAAAAAAAAAAAGATTTATTTATTTATTTATTATATATGAGTACACTGTAGCTGTGCAGACACACAAGAAGAGGGCATCAGATCTCAGTACACATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGATGAGCAGTCAGTGCTCTAACCATTGGGCCATCCCTCCAGCCCTCACTGAAGCTTTTGACAGATGAACAGCGCGTCTTCTGCCTCCATCTTCTCGAGAAGAAACAAATACCACAGAACCCCATGCAGCCGCCTGTCACAAGTCTCTGATAAGTAAACAAATTAGAAATTAGATATTGAGTAATCTCAGACCAAGAAATAGTTAAATTCTTTGAATTTTTTTAAAGTTTATTTAGCATGGTCTTCTGAGTGCCGCTGTTCTGTTTGGCGAGTTGTGGTCTGTGGATCTTTTCCTTGGAGTCTGAGATGTCACCCATTGACCTAACGTGAGAATGCTAGTGTCCCCTGATGCCAGCATCAGGGGTGCAGGCAATGAGCAAGAACTGAGGTCTGTGCTCAAGGCGGGACCGACCCTTCTTTTTCTCTAATTCCACGCAG
Seq C2 exon
ACACGTCTTCGGCCTCTGAGGATGAGGGCTCTCTGAGACGCCAAGCTGCGCTCTCTGCTGCCTTGCAACAAAGCTTGCAGAATGCTGAGTCCTGGATCAACCGCTCAATCCAGGGATCGTCCACTTCTTCATCTGCGTCTTCCACGCTGTCCCACGGAGAGGTCAAAGGAACCAGTGGGTCCCTAGCTGATGTATTTGCCAATACTCGAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056106:ENSRNOT00000086577:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.944
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PD(25.2=69.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]