DreINT0057219 @ danRer10
Intron Retention
Gene
ENSDARG00000005350 | dip2ba
Description
DIP2 disco-interacting protein 2 homolog Ba (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2305]
Coordinates
chr23:27462588-27463762:-
Coord C1 exon
chr23:27463637-27463762
Coord A exon
chr23:27462831-27463636
Coord C2 exon
chr23:27462588-27462830
Length
806 bp
Sequences
Splice sites
5' ss Seq
CCGGTGGGT
5' ss Score
7.85
3' ss Seq
TTGTATGCATGTGGCCACAGATA
3' ss Score
6.53
Exon sequences
Seq C1 exon
ATATCCACACAGAGGCAGTGCAGGCAGCTCTGGCCCGGCATAAAGAGGAGAAGATGGCCCTTCCAATGCCCACTAAGCGGCGTTCAGCCTTCGTCCAGTCTCCTGCAGAAAACTGCACTCCTCCCG
Seq A exon
GTGGGTCATGCATCGCCCACAAGCCTTCTGCTGCCCCTTCTGTCCAGATCTCACTGACCAGCAGGGTCTCAAAAAAAAAAAAAACCCAAACCTTAAAGGCACACTCTTGTGTTTAAGGCCACAATGTATTTGTATATATAATATATATTTGTATTTGCCACAATGTATTTGTGTGTATATATATATATATATATATATATATATATATATATATATATTTTTTTTTTTTTAATTAATCTAGCTATATTTTATAAAAGGCTGATATTTTGAAGCCATTTTTTTCCTGCACTTAAAAAGACCATATAAAATGACTGCATTTTTTATTATTATTAAGCTGTTATTTCAGTATCAAGGAGTACATAATTTTTGTTGCATGGAATTAATTTCAGTTTACAATAATAACTTTAATATGTTATGCAAATTGTCAGATGTTGTATTTAGTTAATGTAGGATATATCAGGGTGTCAGCGGGGTCTTAAAAAGTCTTATATATATATATATCTTGGTGAGACCTGCAGAAACCCTGTATATTTTTGTTTATTTTCTAGTGATATTATGTTAATAACTCTATTTTATAGAACCATATTAAGTTAATATGGAATGTACCAGTTAATAGGAATGTAATGCAATTATTACCAGTCTGTTGATCACAAATTCTATAACGCTGCTTATTCTATCTTAAGTTGTCATATCAAACTCATCATGTATATGTGTCTGCCTTTTGTGGTCTTTATCTGTAAGCTTTTCGTTTTTATTTCTATTCATTATTATCTTTTTAAACTGTTGTTGTATGCATGTGGCCACAG
Seq C2 exon
ATACATCGTCAGCGTCGGAGGATGAGGGCTCCCTGCGCCGGCGTCAAGCCGCAATCAGTGCAATGCTGGCTCAGAACCTCCAGAGTCCCGAATACTGGATCAACCGATCAGTCCAGGGCTCCTCCACATCCTCCTCCGCCTCCTCCACGCTTTCTCACGGAGATGGCAAAACGCACAACCACAACAACCACAGCCAGGGGCAGACCAGTGCGCTCGCAGATGTGCTGGCACACACCCGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005350:ENSDART00000019521:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.992 A=NA C2=0.927
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PD(25.4=69.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGCCCGGCATAAAGAG
R:
CTATGCGGGTGTGTGCCAG
Band lengths:
342-1148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]