MmuINT0049599 @ mm9
Intron Retention
Gene
ENSMUSG00000023026 | Dip2b
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:99972453-99981794:+
Coord C1 exon
chr15:99972453-99972578
Coord A exon
chr15:99972579-99981581
Coord C2 exon
chr15:99981582-99981794
Length
9003 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
3' ss Seq
TTTTTTCTAATTCCACACAGACA
3' ss Score
8.09
Exon sequences
Seq C1 exon
ATATCCACACGGAAGCAGTCCAAGCTGCTCTGGCAAAACACAAAGAACAGAAAATGGCTTTGCCAATGCCCACCAAGAGGCGGTCCACATTTGTCCAGTCTCCTGCGGATGCCTGCACACCTCCGG
Seq A exon
GTAGGTGTATCACCCTTCCACTTTGAGAGTGACTGCATGGGCATTTGGAAATACTCCTTTTCCTTTCTGTGACCTAGAACTGCCTACACATCAAATAAACCTAAGGAGTGCACTCTGAAGGGAGCTGGTGAGCAGCCATAACAAGGCCCTCTAAGACCTATACAGACTGCCTCCTCCTGAGCCTGACTCACTTAGTAAGCACGGGCACAGGCCCTTTTTTGAGGAATTTTGGATGTTTTGTGTCTCCAAATGCAATTGATAGTCATAGATTTAACCTATTAGTCTCCTCAATTGATGTTTTATCTCAACAGCCAGCATAGGAGTGGGTGGACTTGGGACAGAAATCTTTATGCTGTTAGAGATTTTAGGAGCATGATAATACAAATTTGATACAGATCTAAAAAAATAGACATCTGTTAATATATTCTTATATTTTTAAAGTGTTTTTTTCTATGTGAGGTTCAAAAGTAAGTGGGAAATAGATATCCCTCCCTCTCCACTTACCAGACTTGGAATTTATTCCTCCCAATGTAAAGTTTCTTTCCTGTTCACAATGTTTTGCCAAGCTGGGCAGTGGTGGTACACTCCTTTAATCCCCGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACACCCAGGACTATACAGAGAAACCCTGTCTTGAAAAAAATAAAACAGAATGTTTTGCCAAATTTATTAGAAGAAGAAGAAACCAAAAAAAAAAAAAAAAAAAAAACCCTTATTTTTTCTTTAGCTCAAATACCAGACAATATTTTTTAAATTATTTATTTTATGTGTGTGAGTGTTTTGCTTGTATGTATCTGTGTATACTGTGTACATGTCTGGTGCCCTTGGAGGCCAGAAGAGGGTAACAGGTTCCATAGAACCATAGTCACAAAGTGTTACAAGGGCTGGGCACTGAACCTTGGTCCACACACAGTAAGAGCGGTGCAGCTCTTAACCCCTGCCATGGCTTTGGCAAGCTTCCCTGGGAGCCCTGTGGCTGTTCCCTGGTTACAGCTGCCACGCTGGGCTTCGCTGTTGGTCCATGCTCATGTCACTGTTCCCTTCTGGGTTTGCCGAACTTCTCAGGGCACTTGAGTCTGCTGTGGGCTCGTTAGCTGTGTGCGCTTCCTTCCCCACACATTTGTGGTGTCAGTATGTTTGAAAGAGAAATAGCTCTGTGGCTTCAAGTGTTTCTCAAAATGTAACCCAGGATACCTCTGGCAGACTAACACAATGAGGCATTTTGTGTCCATAGTGGTGCATACTTGAGGCCTACTCATTCAGAGTCTTGGATGGATTCCCTTCCACATTTGTGCAGTGTACAAGATGGGTCCTGGGCACAAAGGGGGCTCTCAGTCTTGTAGCCGTCCGTGTTGGCAGATTCCCTGCAGAATAGCTGAAGGTTCAGTTTCAGTAAATGGCAAAGGGCGGGGAGCTGTGTGACACGCAGCCCTCTCCCAGCCTCTGACAAGGCACTGTGGCTTCAGAGTAAATGGCTGCTCTCATGGCTCTGGGTTAGAAGAGAGAGCCCATCAAAGAATTGAGAAGGCTCTCAAGGAATGGGAACCTGTTTGGCAGGCCTTTCATAAAAGTCACTGCCACCGGGAACTTAGCAGCTCTCTAACCAAATCACAGTTGTTCACTGTTGAATGGAACCATAGTCCTTTGCAGTCTACTGCAAGCCTCTATATTTCTAAATGTGCGTGCTCTGTTCTTGTGGAACCTTCAAGAATTTTGTACCATAATGCTCTTGATCACATTCCAGGTGTTAATAATTTCATAACAAAGATACAGTCCTCTCTTCTAAGACCTGACTCAGCAGAGCAGAGTGATCAGGTTCCCTGTCCCTTTACCTTCTGTTCTAGGGACTTCTGAATAGGATTCAAAACACCTCTATGTGCTATTAGGGACATCTGTGTTGCAAGTAGAAAATCTCTCCCATTTTGAGGAGCTGGGCCTGGTGGTGCACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGCGTTACACAGAGAAACACTGTCTTGAAAACAAAAAAACAAAAACAACAAATAATAATAATAATAATAATAAAAACAAAATAACAACAACAAAAAAACAAACCCCGAGATGTTGAGGTCCCTCCAGGCTATCTCACACAGCCCCCCAGTGTGATAGATCTTGGTTTTCTCATTCAACTGTCCTGCATATACCCAGGTACAAGTACTTTGCTCCAGAGAGGGAAGGTATGAGACCTATATCCTCAGGTTCTGCTAGCTTCTTCTGTTAGCAGTGGAATTTGCCGCTTTTGGGGGCAGTGGTGATGCACGCCTTTAATCCCAGCACTCAGGAGCAGTGGAAGGCAAATCTCTGAGTTCTAGGCCAGCCTGCTCTACAGAGTAAGTTTCAGGGTAGCCGGAGCCACATAGAGAAACCCAGTCTAAGAACAAACAAGCAAGCAAAAGTGGCTTGGCTGCTCCTTTTGTAGTTGAAGCCACTTAATGTGTCCCAGGACCTGCAACCTCTAACTCAGGGCCATCACATAGTTTTATCTAGCTATGTCCTTTTGCTAGTCCTGAGGACCAAAGTTAAGAGGCTGTATTCTAGGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGGAGAAGGAGGAGGAGGAGGAATGATGGGATTGCTCATCATTGAATATTTTTAAAGTCAGCATCTGGCAATTATACAATGGTCAGAACGCAGGCAGCTGGGGTGGCTCAATGGAGTTTGAACCTCCAGCTCCTTCCTAGGCTGAGTGCAGTGGTACACATCTGTAACTCTAGCACTGTGTGCGGAGGAGGCAAGTGGGTTCCTAGGGCTCACTGGCCAGCCAGTCAGCCAGTCACCAAACCCATGTCAACCTCTGGCCTCCAGAAACACACACCTGCAAGCACACCCCACCCACACATACAGCCTCCTGTGTACCACAGTCCTCTTCGATCTTTGTACATTGACTGTCAGCCCACACGTCCGTGTGCTGTGTTGTGTGGAGCTCACTTCTGGGGCACAAGTCACTCTGCTCTCCCTGTGGGAGGTACAGTCTCCTGGGTTACTAACCGGATGAAAATTGAGAGCTGCCTGATCAAACGGGTTTAAGGAGGAAAAGCTTTAAGGGGGCGGACGTTTTGGCTTTATTTATGGTGTCATGCAGTTTAGAAGCAATGAGAACAGTTGGCATGGAAAATGATTTGTCTTTTTTTTCATAAATGACTCTCAGATAAGACCTCAGTCAACCTAAAATGTGATTATTGACGCCTATGTTAAACTGCCGTGGATTAGAAAACTCAAGTTTTCTAAGTGTGCAGTGACTCCTAGTGTTAGCACCTGTGGCCTTCCCCATCCTTTACTGCCTGAGTGACTGTGCTGCAGTTGTCTCATGTGCTGATGTCATGAGGCGATGACCTCAGCTCTCTTTATAGAGGTCCTTTGTGTAACGCCACTGCTCATTCATACAGAAATAAATACAGTGCTGACCCACAGACTAACTTAGTTATTTCGGTTTCCGGGCTTCCCTGCAGCCTGTGAGGTTATTGTTTGGTGCAGTGAGAGAGGGCAGGTGACCCCAAGTGGAGGGAAGCTGTGTGTGGACGTGTGCTCTGACAAGGTTCCTACCTGCCAGGGATGGGCTGGACGACAAGGAAAAGCTTTTCTCCATAATGTGTTAATCTCAGCCTCTGCATTTCTTTACCTAAGAATGATGCCCTGGGGCACACTGGACATTGCTGGTTTTCATCCACCTCAGAGGTGTTGTATGGGATTGCGGTGCCTTACCCTGTGCCAAGGACTTTCACTAAGACGGCCCTGCCAGGCTGTGTTGCCTGTACGTGTTTGCAAGATAGGGAGAGCAGTGGGTCTGCAGACAGGAGAGAGCCAGATGCTCATTGTCAGTGGGTAATGGTTAACTCAGTCCTTATCAACCCTAAGTGTCACAGGCAGGAAACCCCTCTCACCTGACAGTTGCCTATATATGCACAGTACCACAGAAGGGTAAACCTAACTAGCCATCACCTCCTGAGAGCTGCCATTCTGTCACTTAAATGTTACTTGAAAGAGAATCCCTAGGCTGGGGATGAGGCTCAGCATGAAGCACCCCCCCCCCTTCAGTCCCTAGCACCACACAACAGATTTAGTAGCAGGAGAAATGGCTCTTCTGTGTGAAGAGCTTGCTTGCAGTCACCTGCTCCATGCCCAAGTGAGATGTCGCGCTACTTTGTAGTGATTGTTAGAGTGCACGCTCATCCGGCATGTCAGTGCACTGTGGCTTACTCGCCTAGACCTAATTTTGTTACCTGTTGTGTGGGCCCAGAGGCGGGATCTATTGTTCCTTTCTTTTCTAAAAGATTTTTTTAAAGTTTTGTATGCCTGAGGGCTTTGGCTATATGTATATATATATGCACTGTGCCATCTCCTAGAGCTGGAGTTACAGGCTCTTGTGAGCTGCCATGTGGTAGCTGGGAACTGAACCTGCGTCTTCTGGAAGAGCGTCCAGTGTTCTTAACTCCTGAGTCATGGCTCCAGCTCTGGTGGGCGCTGTCCTCCAGGGCCCGTCCACTCAGTGCTCCTCAGCACGTCTCTGCTTTCAGGTGGTGTCTGTTTCAGGTGCCATTTTCATTCTTGTAAGTCTTAGCAAGTTTCAAGTTAAGTCTTTTTCAAAATTTGAAAAGCCTTTTCAAATTTGATTTTTACAGTTTTATTCAATTAAGATTGACATAATATAAGTAACTTTGGAGGGGACAGTTGGTGCTGTCTTCACACACCCCAAGCCTGTAGCTATAGCTACAGCCTAACAGCACATACGTAGGTACGTATTTTGCCAGGTTGTGACATAGAAACACAGTTAAGATAATGCCCATCTCTGCAGTCTCCTGAGCGCTTCACGTTCCTCTCACCCCGATAACCACTGCTTCGCTCTCCTTGTCTCTGTGTTGGCTTGTGTTTTCTCTAGATGTTTATGCAATAGAGCCATGCAGTTTTGTCTCCCCCACCACCACCACCACACACACACACACACACACACACACACGCACACGCACAGGTAGAGCAGGAGGGATGGGCTAACTTTCATTCACCCTAAGTATTTTGAAACTCTTCCATGTTGTATCCATCCCAATAGACGGCTCATGGCTGAGTCTGACTATAGTCTATCCATCCATTTGTCTGTGCTTGGCCATTTGGGTTGTTTCCTGTTTTACGTTGTTACTGGGAATCAAACCTGGGTCTTTTGGAAGAACGTCCAGTGCCCTTAACTGCTCAGCTATCTCTTCAGCCCCAAGTGTTCACTTTTTAAAAATAAACATTTTTTCCATCTCACTCCGGCCCCGCCTGCTCCAGCCCTAAAATAAACATTTTTAATATAATGTCCACATAACTAAAGTCATAGCAGCTAGGAAAAGTTAGTAAACTGGGGACTTCTCTTCTCTTAAAAACAATAAGCAAATCATTTCTATGTCTTCTAATTGGTTACAAATAGATGGTAGACTTCTGATGAACACTATCAAGTGGTGCCTGATAAGTCACGTCACTCCACAGCAGGCAAACCATGCTTTTAGGATTGGTCTCGGGGCTGGGGCAGGGGCTGGGGCTGGGGCAGGGGCAGGGGCAGGGGCTCAAGAGCAGTGTGTGCTTGCCTAGCGCGAAGGCTTAGGCTTATTCCCTAGAACCACCATCTGAGCAAAGTAGTAACTCCTACTGTATTTATTCCCGGCACTCAGGAGGCAGGAGGACTGATTGTCATGAGTTCAAAGCCAAGCTATCCAGAAATAGATAAGCCACTGCACTGACCCAGGGTATTGTTATCTATTTGGCATTTTCTGCCAAGCCCTACAGCCTGATGCCCAGGGCCCAGAGAGGCAGGAGAAAACCAGCACCCACATCGCCCTCCAACCCCAGAGGCGCCCCCGGCACGCATGTCCCCTGCAAATCAACCCTAGAGGTGCACCCCGGCATGCGTGTCTGCTGCAAATCCATTCCTGAGTTTGAAAACAAATTTCTACAATTATTCCTGGTTGACAATGGCTTTTTTTTTTTAAGCTACAAAAGAAATTATTTAAAAGATCTCATTTTGATTTTTTAAAAAGTGTGGGCTCAGACAAGTATGGTTGGTCATGCCTAAACCCATGGGTGTGGGAGCTGAACTTGGGTCCTTTGACAGAAGTAAGTGCTTGTTAACCGCTGAGCCATCTCTCCAGTGCCTTATTTAAATTGTTATTAAGGAAACTATCAGATACTCTGTCAGATCAGGAAGATAGAATCCCCTTCTTATCAGTAGTCCAGTGCTTGAGAAGGGACTGCTGTTGATTGTAGCTGCAGGCTGCCTGCTGGCCCCGCAGTGAAGTGAGCCCTTGGCACCTTGTGCCCCTGATGTCTGTCCTCATTACTGTCATTCTCTGTTTTGCTCGTGAGCTTCAGCTGGTTCCTGGTTTGTTTTGTTTTGTTTAAAGATTTATTTACTTTAAGCATTCACCATTGCTTTCTTCAGACACACCAGAAGAGGGCATCAGACCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGACTTGAACTCAGGACCTTTGGAAGAACAGTCAGTGTTCTTAACCACTGAGCCATCTCTCCATCCCTCCTGTTCTTTTTTTTTTTTTTTTAAAGATTTATTTATTATATGTATGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATTAGATCTCATTACAGATGGTTTTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCCTCCTGTTCGTTTTATTAGTTGCCTGAGATGTGCTCTGTTTTCTGTCCCTGCATCCTCTCTACCTGATGCCATCTCTCCTGCCTCTCAGCCAATCCCTGCTCATGCTGCAGAGCAAAGGAGCATGCACTCCTGCCCGTCTCTGAACCTATGCAAGCAGGGCTGTGTCTGTCTCTCCAGGCTTCTCATCGCCCGACTGGTGTAGAGCTCCGTCATGTTGCTGAGTGGATAAGCAGTCCTCACAATTAATCATTTCAACCTCAAGCTACAAGTAGAGTGGTGGGCCTCAGGGTTCAAATGAAAGACAGACACCAAAGCCATGTTTTCCCCCAGCCTATGCTACTCCATAGCTGTAAGCCATTAGACACCCAGAGGAGGACTGGCAGACAAAGCAGGTAATTGAACTGAAACACTATACCTAATTATATAATTGATCAAATACAAAAGCATAATGCAATTAGTTTTCCATAAATCCAATAATGAAAATACTGGTTTTACTATCTATAAAAATTGATTTATTTTGGTTTTAGACTTACACAAATTAAAATAAACAGTAAGGGCAGCTTGTAAATCCAGAGGCCTTTGTGGGATCTGAGATGTCACCCAAAACACTTTGTTCTTGTGGTGAGTCACAAATCTCTCTCTTCCCTGCCCCCACTTCTTTCAGGATAGAGCTGAAAAGGGTGTTTTCTAGAAATTATAATACTATCTTTAAATACTGCTCTCTTGTGTTTAGCTTTGACCATTCCCTGTTATGTTATATGTCTTCTCCTTTAGGGAGCCTTGCTTTACCAGTGAAATCTCTGGGGTCTCCATCTGTCTCTGTGTTTGCCTGTCTATCTGTGTTTTCTTCCCTCCCTCCCCCTCCCCCATCTCACAGCTCCTTATAATGTGCTCTGGTTATACTGACATACTTAGACCCTGGGCCAAGATCAGTCCTCTTCCCATAGAGTTCTCCACTTGGTCAATTTCTAAAAGCAATGTTGTATTCTAGTGTGGGGTTGTATGTTGTCAGTGCCACACTGTGTGGCTTTTTAATGGCACATACTATCTCATAGACAGTCATACGTCTAAGAGTCCCTAGGACCTGACTTAGTTTCCGGCACATAGTGCATTGGGAATCATCACAAGGCTTGCACTTGGGTCTCCTTTGCTGTGAGGTAATGCGCTGCTGGTGTCCTGAACAAGAAGCAAAGGTTGCGAGCGTTGGAGCTCTGGCTTTGTAGTGTAGATTTACAGATTCTGGATTACCATAATGGGGTTTCATTGTTTGTTTTGGTGTGGTTTCAATCCCACTGTGGCATGGTAGCGATTCTCCTGCTCTCTTATTTACTTCTCCAGCGCTCTGACGCACTGCATGACCTGGACCCACTCATTCACCTGAATTAGGCAAAAGTTTCTGCAAATCTGAGCATGACTTTTTTTAAATTAAAAAACGAACAGACAAACAAAATCTGGGTATGTGGACATGTGAGGCCTTGGGACTGGGGATATAGTGGTTAGCTTACACCTTAGAGAGTCCCAGCCTATGATGACTCTGGCTTCTCCCCAGCTTTGGCCTCCCTGTATATGGTTGGACTTTTTCTAGGCAAGATGTTCTCATTTAGGCCTGGTTCCTGAAGTCAGTCAGGCTGAAAGGCACCAGGGAATTGTCAGTCTTGTCTAACTGACTGCCGTGTGTGGAAATCACCCCTTCCAGCTTTGACCAGCTGCTTTTCTAGTAGAGCAGGCAGTGCCTCGGGGCTAAGACAGTTTCACATCCCACTTGAGTTCCCTATCAGCAGCTCTCACTGAAGCTTTCCACAGAAATAAATGGTGCCTGTCTTCTGCCGCCATCCTTTCCTTTTAAGCAGAGACAGATACCCACAAAACCCCACTTGGCCACCCGTCACAAGTCTCTGTTAAGTAGACAAACTAGAATTTAGACATTAAGTAATCTCAGAACAGGAAAATACTTGGGAGATGTCACCACTAATCTAACTTCAGAATGCTAGTGCTCCCTGATGTCAGCACCAGGTGTGCAGGCAATGAGCAAGAACTGAAGTCTGTGCTCGAGGCAGGATCGACCCTTCTTTTTTTCTAATTCCACACAG
Seq C2 exon
ACACGTCTTCGGCCTCTGAGGATGAGGGCTCTCTGAGACGCCAAGCTGCGCTCTCTGCTGCCTTGCAACAAAGCTTGCAGAATGCTGAGTCCTGGATCAACCGCTCAATTCAGGGATCGTCCACTTCTTCATCTGCATCTTCCACGCTGTCCCATGGAGAGGTCAAAGGAACCAGTGGGTCTCTAGCTGATGTGTTTGCCAATACTCGAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026-Dip2b:NM_001159361:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.944
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PD(25.2=69.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: