BtaINT0050086 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49086389-49087151:-
Coord C1 exon
chr22:49086926-49087151
Coord A exon
chr22:49086509-49086925
Coord C2 exon
chr22:49086389-49086508
Length
417 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
AGCCCTTCCCCTCCTGCCAGATC
3' ss Score
10.39
Exon sequences
Seq C1 exon
GGCCTTCCAGACCCAGTGCCCATCAGCCGAGGAGGTGCGGGAGGTGGTGCTCACCCACCTGCACGAGAAAGAGGTCCTGGACAGCTCGCTGCCCAGCAGCATCATCATCGGGCCCTTCTACATCAATGTGGACAACGTCAAGCAGAGCCTGTCCAAGAAGCGCAAGGCCCTGGCCACTTCCATGCTGGATATCCTGGCCAAGAACTTGCACAGGGAGGTGGATAAC
Seq A exon
GTAAGTGCCCGCCTGCCCGGCCCCAGCAACTGCAGCAGCACATGCACCCGTGCATGCAGAGTGAGGCTTAGGCGTGTTGATGGAAGGGTCTGGAAGTCTCCTTGCCTTGACCCTACCAGGGGTCCCCATGAGAGGTCCCAGGAGGTGGGGGCTGCTCTCTATTTCCCTGGACTTGTACAGACCTGGGGACCCCTCACAAGGAACCCCCAGAGCTGAGGGTGTGGTGCTGGTGCAGGAGGCTGGGGAGGAGGGGACGTGCCAGGTGACCCTCAGCTCCCCAGTGAGCTGGCAGGGAGCACCCCTTCTCAGATTGCACTGAAGGATGTGGTGGGGTGGGGGACCAAGGAGGAGGAGCAGGGCCCTGGGAAGGCAAGAGAGGGGCCCGCGGCCTCCCCAGAGCCCTTCCCCTCCTGCCAG
Seq C2 exon
ATCTGCGAGGAATTCCGCAGCATCAGCCGCAAAATCTACGAGAAGCCCAACAGCATCGAGGAGCTGGCTGAGCTTCGCGAGTGGATGAAGGGTGTCCCCGAGAAGCTGGTGGGGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794:ENSBTAT00000066095:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0240317=Seryl_tRNA_N=PU(39.0=51.3)
A:
NA
C2:
PF0240317=Seryl_tRNA_N=FE(39.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAGACCCAGTGCCCATC
R:
CTCCAGCCCCACCAGCTTC
Band lengths:
343-760
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]