MmuINT0050497 @ mm9
Intron Retention
Gene
ENSMUSG00000019027 | Dnahc1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:32116974-32117850:-
Coord C1 exon
chr14:32117625-32117850
Coord A exon
chr14:32117094-32117624
Coord C2 exon
chr14:32116974-32117093
Length
531 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
CTCCAATCCTCACCCACCAGATC
3' ss Score
5.39
Exon sequences
Seq C1 exon
GACCTATCAGACTCAGTGCCCATCAGCAGAGGAGGTTCGAGAAGTGGTAATTACCCACCTGAAAGAGAAGGAGATCCTAGACAACTCTCTGCCTAGCAGCATCATCATTGGTCCCTTCTACATCAATGTCGACAATGTTAAGCAGAGCCTGTCCAAAAAACGCAAGGCCCTGGCCACTTCTATGCTGGATATCCTAGCCAAGAACTTACACAAGGAGGTAGACAGT
Seq A exon
GTAAGTAACTACTGGCCTGGCCCTAGCGACCACAGCAACACACAAGCCTTGGACACATGGCGTGCTCTCACTAGTAAGATGCCCTAGACAAAGTCTGTGGTGTCTTCAAGTGCCTGGGTCAAAGAAAGGACCTGGAAGTCATTGTGCCTTGATCCCTACCTGCATTCATATGTATCCATACGTTAATAGAAGGTTGATATCTCCATCCCTAGACTTTCAGAATCCTGGGACGTTCTTGTGAAGTACAGGCTGGGCTGGATTGCTCCACAGGGCTGAGGGTATGCAAGTGCAGATACCAGAAACACTAGCTTTGTTCCTGCGTCCAGAGGAGATTAAGAGGGTGATATCTTTGCCTCAGAAGCGATTTTAGCACCATAGTGACCCTATCAGGAACCTCTCTCTTGGGAAGAATGGCAGAGGGTTGCTATGGTAGAATAATTGACTTCGAGACCCTGGGGACCTTGAGAAACAGGTCTCAGTGTAGGCAAGGCACATAACCGTCCCTAGAACCCTCCAATCCTCACCCACCAG
Seq C2 exon
ATCTGTGAGGAGTTCCGCAGCATTAGCCGCAAGATCTACGAGAAGCCCAACAGCATTGAGGAGCTTGCGGAGCTTCGAGACTGGATGAAGGGCATTCCTGAAAAGCTGGTATTTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027-Dnahc1:NM_001033668:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0240317=Seryl_tRNA_N=PU(41.9=51.3)
A:
NA
C2:
PF0240317=Seryl_tRNA_N=FE(41.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTATCAGACTCAGTGCCCA
R:
TCCAGAAATACCAGCTTTTCAGGA
Band lengths:
344-875
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: