DreINT0058019 @ danRer10
Intron Retention
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34447072-34447934:-
Coord C1 exon
chr11:34447709-34447934
Coord A exon
chr11:34447192-34447708
Coord C2 exon
chr11:34447072-34447191
Length
517 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
TAATTATGCATGTATTTTAGGCA
3' ss Score
7.33
Exon sequences
Seq C1 exon
GTTGCACAGTCAGGAGAACCAGACACCTCAGGAAGTGAAGCAGGAGGTTCTGGAGCACCTGATGGAGGTGGAACATTTAAATAAGTCCATTCCGTCTGCCATTATCATCGGACCGTTCATGGTCAATGTCGAAGCCATCCGGCAAAGTCTGGTAAAGAAACGGAAAGGTCTTGCCAAAGCATTGCTAGACCGTCTTGCCCTGAGATTACGTCAACAGATGCAGGAT
Seq A exon
GTAAGTCATGGTTCATTAGAACTAGATGCATTTTTAAAGGAATAGTTCACCCAAAAATGAAAATGACCTCATCATTTACTCTCTTGCATGCTGTTTTAAACATTTAGTCATTTCTTTCTTTTAGTTTCAATCTCTTCTTCTTCATAAAAAGAAGATTTTGAAGAATGCTGATTGCTGGACTTCCATCGTAGGATAAAAATTCTATGGAAGTCAATGGGTACCAGCAACCATCATTTTTCGAAATATCTTAATTTGTGTTAAATTTTTGGGTGAACTTCCCCTTTAATTCTAAATGCAACACAAAGATCACACCAAAGTGACAAATGTTGACAAATGTAAACAGTAACCAAATTATAGCACATCACTTCTCAGACATTCTGTGACCAGTTAAGTGCATGTTCAGTCATTGAGAATATTCTCTGACAGACACCAAAAGACTCAACGTTGATCACATTGACTAACCCAACAAAACGTTGTTGCAAATTGGCCTTTATATGTAATTATGCATGTATTTTAG
Seq C2 exon
GCATGTAAGGAGTGTAAAGCTATCAGCAAAAAGCTGTTTGAGAAGCCCAGCAGCATTGAGGAGCTCACAGAGCAAAGAGAATGGATGAACCAAGTCCCTGAACAACTAAAAGCGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115:ENSDART00000161471:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.099
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCACAGTCAGGAGAACCA
R:
TGCGCTTTTAGTTGTTCAGGGA
Band lengths:
342-859
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]