GgaINT0019458 @ galGal3
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2876939-2877567:+
Coord C1 exon
chr12:2876939-2877164
Coord A exon
chr12:2877165-2877447
Coord C2 exon
chr12:2877448-2877567
Length
283 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
GTCTTTGCTGTGTCCTGCAGATC
3' ss Score
11.8
Exon sequences
Seq C1 exon
AGACTACCAAGAGCAATGTCCACCTGCCCAGGAGGTAACAACTATAGTGAACACGTACTTGTCTGAAAAGGAGAACCTGGACAACTCTCTACCTACTTCTGTTGTCATTGGCCCCTTCAGTGTCAGAGTAGAAGGTGTTAAGCAGAACTTGTCCAAGAAGTATGAAGCACTTGCCACTTCCATGCTGGACTTACTGGCTGAAAACCTCCATTCAAAGGTGGAGAAT
Seq A exon
GTAAGTCACCTGGTTTCATACATTGCATGCCAGTGTCTTGTCTTATCCCTCTGCTTTTGAAGTTGTTGTGTTTGTGATATGGCCAAAAGGCAGCTCCTACCATCTTATAGGAATGTGTCTGTGGATTGAGAAGCTCCACCTAATGGAAGGCTGGAAGGTCCTTCTAATTGCTCTGAAATACAGATAGTTATGGCTTCCAGTTCTCAATGAGATGAGGTTTGCTAGCCCCATTGCTGAAGCTGCACACCTGTAGGGGTGATGTCGTCTTTGCTGTGTCCTGCAG
Seq C2 exon
ATCTGTGGTGTATACAGAGCTGTCAGCTTGAGGATACATGAAGAACCAAACAATATTGAGGAGCTGACTGAGCTGCGGGAGTGGATGAGGGCAGTCCCTGAGCAGCTGGCTATGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAGAGCAATGTCCACCTG
R:
ACTCCCGCAGCTCAGTCAG
Band lengths:
303-586
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]