RnoINT0048566 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7386981-7387913:-
Coord C1 exon
chr16:7387688-7387913
Coord A exon
chr16:7387156-7387687
Coord C2 exon
chr16:7386981-7387155
Length
532 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
CTCCAACCTCCACCCACTAGATC
3' ss Score
4.4
Exon sequences
Seq C1 exon
GACCTATCAGACTCAGTGCCCATCAGCAGAGGAGGTTCGGGAAGTGGTAATCACCCACCTGAAAGAGAAGGAGATCCTAGACAACTCATTGCCCAGCAGCATCATCATTGGTCCCTTCTACATCAATGTCGACAACGTTAAGCAGAGCCTGTCCAAAAAACGCAAGGCCCTGGCCACTTCTATGCTGGATATCCTAGCCAAGAACTTACACAACGAGGTAGACAGT
Seq A exon
GTAAGTAACTACTGGCCTGGCCCTAGCACAGCCACACATAAGCAGCCTTGGGCACATGGGGTGCTCCCACTAGTAAGATGCCCTGGGCACAGTCTGGGGTGCCTTCAGGTGCCTGCATCTAAGAAAGGGCCTGGTTATCGTTCTGCCTTGACCCCTGCCTACCTTCATGTGTATCCATACGTCAGTAGAAGGTTGGTATCTCTATCCCTAGACTTTCAGAATCCTGGGAGGTTCTTGGGAAGCCCAGGCTGAGCTGGATTGCTCCATGAGCTGAGGGTATGCAAGTGCAGATACCGGAAACCCTAAGTTTGTTCCCGGGTCCAGAGGAGACTGAGAGGGTGGCACCTTTGCCTCAAAAGAGGTTTTAGCAACCTAGTGAGCCTGTCGGGAGTGGCTATCTTAGGAAGAAGGGCAGAGTGTGGCTGTGGTCGAATAATCGACTTCAAGGCCCTGGAGACATTGAAGAGAAACAGGTTCCAGTGTAGGCAAGGCACATAACTGTCCCCAGAACCCTCCAACCTCCACCCACTAG
Seq C2 exon
ATCTGCGAGGAGTTCCGCAGCATCAGCCGCAAGATCTACGAGAAGCCCAACAGCATCGAGGAGCTTGCCGAGCTTCGAGACTGGATGAAGGGCATCCCTGAGAAGCTGGTGATTCTGGAGGTAAGGCAGGCACTGGCACTGGCGGCCAGGAGCCTGGTGGAGCCAGAAGTTGGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTATCAGACTCAGTGCCCA
R:
TGCCTGCCTTACCTCCAGAAT
Band lengths:
357-889
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]