BtaINT0050092 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49082401-49083431:-
Coord C1 exon
chr22:49083178-49083431
Coord A exon
chr22:49082614-49083177
Coord C2 exon
chr22:49082401-49082613
Length
564 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CACCCACCCCCCACCCCCAGGCT
3' ss Score
8.52
Exon sequences
Seq C1 exon
CCTGCCAGGATGTGGCCTTAGACATCCGGGCCCGCATCGAGGAGTTCAAGCCGTACATCCCACTGATCCAGGGGCTGCGCAACCCTGGCATGAGGAACCGGCACTGGGACGTGCTGTCCAGCGAGATCAACATTAATGTCAGGCCCAAGGCCAACCTGACCTTCGCCCGCTGCCTCGAGATGAACCTGCAGGACCACATCGAGAGCATCAGCAAGGTGGCCGAGGTGGCTGGCAAGGAGTATGCCATCGAGCAG
Seq A exon
GTGGGCAGCCCCCCGCAGGCCCTCCCTGCCCCACCCACATGCTGCCCGATGGTGTGGGAAGGTGACAGTCCTGGGCCCCATCCCTGGGGTCCCTCACCTCAGGGATGAGCTGCGTCTTATTAAGTGTGTTAATAATGTGTGTGAAGTGCTTGGCACAGTGTCCACCAGCCCCGTTATTACTCAGTTATTCCTCTCAAGTTATTCCTCCCTCAGGAATGTGCTGAGAGCATTGCCTCACTTAGCAGATGAGCAAATTAAGGCTCAGAGAGGTTCAGCAATTGGCCAAGGCGGCCTAGCCAGTAAGGGCTGGAACTGGGACCAGAGCTCCTAACCAGTGACTTAGCTGCCCCACAGCATACCAGTACATCCAGCGCGTCTGCCCTGGATTCCGACGAGGGCCCATGGGGGACTTGTTGACTAGACAAGATGAGAGTTTACAGACGGGGCTTGACTGAAGGTCCTGGTTGAGCAAAGCCTGACTTTTCCTGCCCAGTGCTGCTCAGTGTGGGCCTGCTCTTTCTGGGGGCCCAACCCTGTCTTATACCACCCACCCCCCACCCCCAG
Seq C2 exon
GCTCTGGACAAGATGGAGAAGGAGTGGTCCACCATTCTGTTCAACGTGATGCCCTACAAAGAGACAGACACCTACATCCTCAAGAGCCCAGATGAGGCCTCCCAGCTGCTCGATGACCACATCGTCATGACCCAGAGCATGTCCTTCTCACCCTACAAGAAGCCCTTTGAGCAACGCATCAACTCCTGGGAGACCAAGCTGAAGCTGACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794:ENSBTAT00000066095:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(20.4=100)
A:
NA
C2:
PF083938=DHC_N2=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGGAGTTCAAGCCGTACA
R:
GCTCTGGGTCATGACGATGTG
Band lengths:
356-920
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]