DreINT0057968 @ danRer10
Intron Retention
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34440863-34442965:-
Coord C1 exon
chr11:34442712-34442965
Coord A exon
chr11:34441076-34442711
Coord C2 exon
chr11:34440863-34441075
Length
1636 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TCATGCATCTGTTGCCTTAGGCT
3' ss Score
6.96
Exon sequences
Seq C1 exon
CCTGTCAAGAAGTAGCATCTGAAATCCGGACTAAAATTGAAGCATTCCGTCCGTTTATCCCTCTGATCCGAAGCCTGAGGAATCCTGGCATGCGGAATCGCCACTGGGAACTTCTCTCTGAACGTATCAACATAAATATGAGGTCCAGAGCAAATCTGACTTTTTCTCTTTGTCTGGAGTTGGGCCTGCAAGATCATGTGGAGGAAATCACACGCGTGGCTCAGGAAGCTGGAAAAGAATATTCTATCGAGCAA
Seq A exon
GTGAGTGCATTTATAGATGCATTTTACTAGGGCCACACAATGTATTGTTTCAGCATCGATATCGCTATGTCGTATTCGCAATAGTCACTTCACAGAATATGCAATGTTGATTCTGAATCTTAGGTGACCAGAGTAGGGTTGCACCAGCTGTTCTTAAATTCTTTCTTAAACTGGAACGTAAAGCCCACACTAGGGACTTCATAACTACTAGCTAGTTTATAACTAAATTTGTTTTTATTTTAGTTGCACCTCATTTCTTAGGGCAAATCGTAGTTATTAGGTCGTAAGCTCTTCTAAAAAGTCATGCGTGGTTGCATTGAATAACGTAATATTTAATAAAAAGCATTTAAATCATTAAACTGATTTAAAATTCTGCAACTAATGCATCTACATATATGAAAATAAAATTATAAATTACATTTTTAATGCACATTACATTACAGTCAGGCACGAATAACATACAACACACACATCTGCATCGCAAGCTGTGAATACACGCAAAGTTATCAAAACATCAACCTTGAAATTTTTTATATCCTACTTATGAAAGAGAAAAGAACAGGAAGGAAAGCTCAATCATGAAGAATTTCACGTTTTAATTGATGGATGGAATAAACACAAAACACTCCTTGAAAGAAAATTAAACTTCTTTCCCAAACCGAGATTTAGAGGAAATGTGAGTAGAGGGGAAAATCATTCTTCATTATGATTGCAAGCTCCTTGATGTAAACTAATCTTGCTGTCATCTTTTTTTCTACCGGTATACACGGTGTGAGGCTGCCATAAATATTTAGTTGGAACGTGGCGTTATGTTTAAACTAATTTCATTGGAGCAACACAAAAATATTTAGTAGTGTTTATGTTGTAACTTAGTGTACCTTTAAGTCACAACTAGGCTATGTTTTAACTTACGCACCGCTGGTACAACCAGCCCCAGGAGCCACAGAAGCCATTTAGAGTCACTGCTAAGTCTAACTTTAACAGAGTGAAAATTTGGCATTTGCATGTGTTTTTAAGGCCCATGACTGTGCATTTCAAGAGAGTTGAAAATACTTGGGCACAAAAAGGTGTAACAAAGATTAATTTATTTGGAAATGAAAAAAAAACTTAGAATTTTTGTCTTGTTTCTAGTCCAAATATCTACATTTTAATGCAAAATTAAGATTACTGAACTTACCCTATTGTCAGATAATTTTGCTTGTTTGAAGGAAAAATTCTTAATTTTGACTTATTTTTTCTAAAAGTGAAAACAAAATAGTATTTTTTACTTGATTTAGATTTTTTTGATATTTGCACTAGATGCAAAGTAAGAAAAGCTTTTTTTTTTGCAATGTGATTATTAAATTTCTGTAGCTGAATACTGTTAGACTCCCCAGAACACCATCAAATAGAGCTATTCTAATCATCTTGTGAAACTGTATTCAGTACATATACAGTATTAGATTTTTCCAAACCTACATTTTACCTTTATGAAGCAGAAAAACACAGCATTTATGCCCATTCACATAAAATATGATAACTAAAATGGCAGATATATCAGTGGTGATCTTTTTTTCTGAATTACATAACAGGACAATTCTACAAGCACATTATGTTTTGTGACAGCATTTTTCATCTCATGCATCTGTTGCCTTAG
Seq C2 exon
GCTCTGAACAAGATGGAGGAAGAATGGTCAACAGTGATGTTTGAGGTGATGCCGTATAAAGAGACAGGAACTTACATACTGAAGAGCCCAGATGAAGCATCTCAGCTCCTAGATGACCACATCGTCATGACCCAGAGCATGGCCTTCTCTCCATATAAAAAACCCTTTGAGGAGAGAATCAGCAAGTGGGAAAGTAAACTGAAAATGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115:ENSDART00000161471:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(20.7=100)
A:
NA
C2:
PF083938=DHC_N2=FE(17.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGATCCGAAGCCTGAGGA
R:
ATGGAGAGAAGGCCATGCTCT
Band lengths:
348-1984
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]