RnoINT0048573 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7382735-7383837:-
Coord C1 exon
chr16:7383584-7383837
Coord A exon
chr16:7382948-7383583
Coord C2 exon
chr16:7382735-7382947
Length
636 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CTGACTGTTCCCTACCACAGGCA
3' ss Score
9.15
Exon sequences
Seq C1 exon
CCTGCCAGGATGTGGCTTTGGATATCCGAGCACGCATAGACGAGTTCAAGCCGTACATACCGCTGATCCAAGGCCTGCGCAACCCTGGCATGCGGAACCGCCACTGGGAGGTGCTGTCCAATGAGATCAACATCAACGTCAGGCCCAAGGCCAACCTGACCTTTGCCCGCTGCCTTGAGATGAACCTTCAGGACTATATTGAGAGTATCAGCAAGGTGGCTGAGGTGGCTGGCAAGGAGTATGCTATTGAACAG
Seq A exon
GTAGGTCCCCAACCACTAGCAGGCCTGATCCACTGCTTAGACCCCGCTGACTAGGCTGATCTCTAGCCCCTGCAATGACGGCCACTTGGGAGGGTAACCGTAATGCTTTCCCGGGGTCGCAGGACATTTTATTAAAAGTTAATAATGTGGGTAGAGTGCTTGGCATAGTGCCCACCATTGCTATATTACTCAGTTTCCCTGCCAAGAGTTTAAAGAGGAGCTAATAGCATTGTCATCATTTAACAGATGGGCACAAGACTTGAGAATGCAGTCAGCCTAGATGCACGAGCTTAATTCCCCGCACTGTCACTAATTAATTAATTAATCAATTAATTAGAAAACCTTAAGGCTCAGGGGGGTTCAGCAGCACCCAAAATAATATTCTTTAGGTGTGAGCAAACTCCTAACTGTCACCCAAGTACCTCTCATGTTGCACATATGTGAGCTTGAGTCGACCCCACATCCAGATAGAGGCCCGCTGGGGACTTGCTGCTTAGGGGAGCTGGGACTGTTTGGCAGTGTGGCTCACGCAGAGCCATGGCCTGGCAGAGTGCTCTGTCCTCTGCCCAGTGCTGGTCGGACAGCGTGACCACCAGTCCTTCCCAAGCGCACAGCTCTGACTGTTCCCTACCACAG
Seq C2 exon
GCACTAGACAAGATGGAGAAGGAATGGGCTTCCATCCTGTTCAACGTGCTGCCCTACAAGGAGACAGACACTTACATCCTCAAGAGCCCAGATGAAGCCTCGCAACTGCTCGATGACCACATCGTCATGACTCAGAGCATGTCTTTTTCACCGTACAAGAAACCCTTTGAGCAGCGCATCAACTCCTGGGAGACCAAACTGAAGCTGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(20.4=100)
A:
NA
C2:
PF083938=DHC_N2=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCGAGCACGCATAGACGA
R:
ATGTGGTCATCGAGCAGTTGC
Band lengths:
354-990
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]