GgaINT0019464 @ galGal3
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2882590-2883910:+
Coord C1 exon
chr12:2882590-2882843
Coord A exon
chr12:2882844-2883697
Coord C2 exon
chr12:2883698-2883910
Length
854 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGG
5' ss Score
4.51
3' ss Seq
TGCTTGTCTCTCTGTTCCAGGCA
3' ss Score
11.59
Exon sequences
Seq C1 exon
CATGCCAGGGTGTGGCAATGGAGTTCCGAGACAAGATTGAAGAGTTCAGACTATATGTCCCCTTAATCCAAGGGCTGAACAATCCCGGGATGGGAAGGAGGCACTGGGAGATGCTGTCAGAAGATATTAACATGGACATCAAGCTAGAATCCGATCTGACCCTTCGTCGCTGTTTGGATATGAACCTGCAGGACCATATTGAGAGTATTACCAAAGTAGCTGAGATAGCTGGCAAGGAATACGCTATTGAGAAT
Seq A exon
GTGAGGAGAGAGGGGTTTGTGTCTGGTTGTTTTTAGGGATGCTTCTTTTGGGCAGCCATTCATTGCCATGGGTGGCATTCATGTGCTTCCAGAGCATTATGCATGTTCTGCAGCACATCTCAGAAGTCCCTTAGGGATGGGAGCAACGGCCACCTGATTGAATTTAATGCATTGGAAGTTATTTTGTCTTGCAAGGAACCTACAGCTGCAGCATAACAGCTCTACCTGATGGTTATGTTGATCCACTGGTTGGTTCCCTCACCTCAGCGTGAGATTGGTAACTGTTAAAATAATTCAATTGACAGCACTCTCCCCGTCAAAAATCACGTCAGGAAGATTAGCTGTGACTAAAAATGGAGCTGGCAAATCCTTTTACGTGGTGGATATGTGCAAGGAGGATTTGCTGGCTCTGGAGATTTATAGGCTGGATGGTCTTTCAGTTTCAGTTGATTAGTTCTGATGTGATCTGAGGTGGTCTTAATTGAAAATCATTACTGTATGGCAGCTTTTGTTCTCTGAAATCTCAGGTGAGCTCCCAGTGGATAGCTACCCCTTCTACAGAGCCATCGTAGCCATTATCGTTAATAGAAACTCTACTGGCATCCTCTGTGCATCCAAGTAGTATCAGTGGTGCACTGGGTTCTGAAACTGCCTTCTCCCCTCCAGATGTCCTTTTAGGACAGTATCAAGGTGTTGAGTCCGTGGACAAATGGATGCATTAAATACACAGCTGCAGTTTTCAGTGGAATCCAAGGGCAAAAATCCATCAACAGGCATTAAGAGAGATGTGGGAGGTGCAATAACCGTTGCAGAGGTTGTATCTGAGAATTAAATTGCTTGTCTCTCTGTTCCAG
Seq C2 exon
GCACTCAACAAGATGGAGAGTGAATGGAGCTCTGTTTCTTTTACTGTTTCGCTTTACAAAGACACGGGTACCTTCATTCTGAAAGACACTGATGAAGCTTCTCAGCTCCTAGATGATCATATTGTCATGACTCAGAGCATGTCCTTCTCACCGTTCAAGAAACACTTTGAGGACAGAATGAACACATGGGAAAACAAGCTGAGGATGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(20.4=100)
A:
NA
C2:
PF083938=DHC_N2=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAAGGGCTGAACAATCCC
R:
ACGGTGAGAAGGACATGCTCT
Band lengths:
343-1197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]