HsaINT0049149 @ hg19
Intron Retention
Gene
ENSG00000114841 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:2940]
Coordinates
chr3:52387396-52389071:+
Coord C1 exon
chr3:52387396-52387649
Coord A exon
chr3:52387650-52388858
Coord C2 exon
chr3:52388859-52389071
Length
1209 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TGGCTTGTCCCCGACCCCAGGCA
3' ss Score
6.84
Exon sequences
Seq C1 exon
CCTGCCAGGAAGTGGCCTTGGACATCCGGGCCCGCATCGAGGAGTTCAAACCATACATCCCACTGATCCAGGGGCTGCGCAACCCTGGCATGCGGATCCGGCACTGGGAGACACTGTCCAACCAGATCAACATCAATGTCAGGCCCAAGGCCAACCTGACCTTTGCTCGCTGCCTGGAGATGAACCTGCAGGACCATATCGAGAGCATCAGCAAGGTGGCTGAGGTGGCTGGCAAGGAGTACGCCATCGAGCAG
Seq A exon
GTGGGTAGCCACCAGCGGGCCCAGCCACTCCAGCCAGGCCCTGCCGGACAGCCTGACCTCCTGCTCTGGCAACCACAGCCACTTGGGAGGATGACAGTAATAAGCCCCATCCCTGGGGTCATGAGGCCCAGGGGTTGAGATGCATTCTATTAAGTGAGTTAATAATGCACATAAAATTCTTGACAGTGTCCACCATTGCTATTATTTTTCAGTTACTCCTCTCAAGAGCCCCAGGAAGGAGCTAATAGCATTAGCCTCAATTTAACAGATGTGTCAGGCCGGGTGCAGTGACACATGCCTGTAAATCCCAGCACTTTGGGAGGATGAGGAGGAAGGATCGCTTGAGCCCAGGAGTTTGAGACCAGTCTGGGCAACATAGGGAGACCCCCATCTCTACAAAAAATTAAGATATTAGCCAGGCATGGTGGCACATGCTTGTGGTCCCAGCTTCTTGGGAGGCTGAGGCTGCAGTGAGCGGTGATTATGCCACTGCACTCCAGCCAGGGAGACAGACTGAGACCCTGTCTCAAAACAAAACAAAAGAAAACAAACAAACAAAAAAACAGATAAATCAATTAAGGCTCAGAAGGGTTCAGCAACTGGCCAGGATGACACAGTAAATGCCAGAGGTGAGACCAGCGCCCACACTCCTCCTAACCTTAGCTGCCTCCCAACATGTGCGTACAACCACATGCAGCACATGTGTAACAGTGAACTGGGCTGAACACAGTGGCTCACGCCTGTAATCCCAGCACTTGGGAGGCCGAGGCGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAATAGTGGGGTGTGGTGGCACATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAATCTGGGAGGCAGAGATTGCAGTGAACCAAGATTGTGCCACTGCACTCCAGCCTGGGCTACAGAGCGAGACTCCACCTCAGAAAAAAAAAAAAAAAAGAGTGAATTGGCCCTGAATTCAGATGAGGGGCTCACACGGGACTTGTTGCCAGACAAGCCGAGAGTATTTGCCAGAGCGGCCATGTGGAGGTCATGGCCAGGTACTGTCTGCTGCTTCCCTGGGCAGGGCTGGTCAGACAGCATCAGGACCAGCCCCTCCCAGGACTCAGCCTGGCTTGTCCCCGACCCCAG
Seq C2 exon
GCACTGGACAAGATGGAGAAGGAGTGGTCGACCATCCTGTTCAATGTACTGCCCTACAAGGCGACAGACACCTACATCCTGAAGAGCCCGGACGAGGCCTCACAGCTGCTGGACGACCACATCGTCATGACCCAGAATATGTCATTTTCACCCTACAAGAAGCCCTTTGAGCAGCGCATCAACTCCTGGGAGAACAAACTGAAGCTGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114841-DNAH1:NM_015512:20
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(20.4=100)
A:
NA
C2:
PF083938=DHC_N2=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATCGAGGAGTTCAAACCA
R:
TCTGGGTCATGACGATGTGGT
Band lengths:
358-1567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)