BtaINT0050128 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49055741-49056413:-
Coord C1 exon
chr22:49056222-49056413
Coord A exon
chr22:49055852-49056221
Coord C2 exon
chr22:49055741-49055851
Length
370 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
GTGCCCCCCCAACCCCTCAGCTG
3' ss Score
5.65
Exon sequences
Seq C1 exon
ATTCAGGTCTGCGTGTATATCCACCAGTCGGTGGCCAAGAAGTGTGTCGAGTATCTGGCCGAGCTGGCCCGCCACAACTATGTGACTCCCAAGAGCTACCTGGAGCTGCTCAATATCTTCTCCATCCTTGTCGGGCAGAAGAAACAGGAGCTGAAAACCGCTAAGAACCGCATGAAGAGTGGCCTCGACAAG
Seq A exon
GTGGGGCCAGGGGCCTCGTGGGCAACCGCTGGCTGCATGTGATTCTGCCCATTCTGTCTCAGCCCTGACTCCACATGACCCCTGTCAGTTGGCAGCCCACAGCGTTTAGATGGGTAGCCTCTTCCCTCGCCGAAGGTGGTGGGCCAAGGGCAAGACCAAAGCAGGTCACCCCAAAGACTTTTAGTGGACTGCTCCCTTCCTCTGGGGCCCCCTGGGCAACCTGGGGGCCCCTGAAGCAGCCAGCCACAGCCTCTCGCTTGTGAATGAATGAGGGCAGCCCTGCAGGGCCCTCTCCCTTGTTCCCCTCCAGGCCTCGCTCTCTGGTCCCTATCACACCTGATTTCCTCTCCGTGCCCCCCCAACCCCTCAG
Seq C2 exon
CTGCTGCGCACCGCAGAGGACGTGGCCAAGATGCAGGAGGAGCTGGAGATTATGCGCCCCCTGCTGGAGGAGGCTGCCAGGGACACCACGCTCACCATGGAGCAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794:ENSBTAT00000066095:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(15.9=67.2),PF127772=MT=PU(2.7=12.5)
A:
NA
C2:
PF127772=MT=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCAGGTCTGCGTGTATATCCAC
R:
TTGATCTGCTCCATGGTGAGC
Band lengths:
302-672
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]