DreINT0058002 @ danRer10
Intron Retention
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34400041-34403010:-
Coord C1 exon
chr11:34402819-34403010
Coord A exon
chr11:34400152-34402818
Coord C2 exon
chr11:34400041-34400151
Length
2667 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
GTGTGTGTGTTTGTTTGTAGTTA
3' ss Score
7.9
Exon sequences
Seq C1 exon
GCGCTGATGTGTGTTGAAATCCATCAAATGGTGTCCAGGAAGTGTGAGCAATACCTAGCGGAACTTTCCCGCCACAACTCTGTCACACCTAAGAGCTACCTGGAGCTCCTGAGCATATTCTCATCTTTGATTGGCCAGAAGAAGCAGGAGCTTCACAGCGCTCGACAGCGAATGAAAACTGGCCTGGACAAG
Seq A exon
GTAATTCTTTTGAACTTCTCTCTTGTGTTGTTGTTTTTTTTACACAATACTTCCCAGTGGGCTCCTTTATAATAATAATTATAATAATAATTCATCTCCCCACGTTCACATGGGTTTCCTCTGGGTGCTCCGGTTTCCCCCACAGTCCAAAGACATGTACAGGTACAGTTGAATTAGGTAGACTAAGTTGTCGTCGTGTATAAGCGGGAATGAGTGTTTCTAAATGTGTGTATGGATGTTTCCCAGTGATGGGTTGCAGCTGGAAGGGCATCCGCTGCATAAAACATATGCTGGATAAGTTGGTGGTTCATTCCACTGTGGCAACCCCAGATTAATAAAGGGACTAAGCTGAAAAGAAAATGAATGAATGAATGATAATAATTCATTTTATTTATTTCTGGACACTCAAGGTTGCCTAACAACAAGCATCAACGAACATACCAAAACAATTAATAAAAAATAAAACAATGCCAGACAAACAGTTAAACATGAGAGAAGTTGAAGTGCAAACACATTGAAGTATAAAATAACATGATAAAGGATAATCATAGGAAAGCCTGCTTAAAAAGATGGGTCTTAAGACGAGATTTAAAGGTGTGAAGACTTTCACTGCTCCTTAGGTCCAAGGGAAGCGAGTTCCATAGCCGAGGAGCTGTAGAGCTAAAAGATACTGTATGGCTCCCATTGTGCTTAATTGAGTTTGAGGTGGCACCAGGGAGAAAGAGTGAGAGGGTGCTCGCTGCAGAGCCATTTGAGGAGAGCTGAGCTCCAGCGAGGGGGAGCATGAGCTGTTGCTCCTCCTCCTGTAAGCTGTTTTAATTCGTACACCAACCCCACCCCTAACCCTACCCCCAGTGACATCACTCGTAGAAGAAGTGCAAAAAAGGTGGAGCTCAAGCTTAAGCTCCCCCTCGCTGGACCTCAGCTCTCCTCAAATGGCTCTGCAGCGAGCACCACTTGGAAATAGTTGGCTGATCTTAGAGTGGGAGAAAGGCAAAAATGAAATTATAAATTATGGATGTATAAAATATGGAGAAGTTCAGTGAGATATTGATTTAATTTAAAAACAACTTAAAAAAATATTTCAATCAATTTGATGTCATAAACTTGACGTCCATTTGACATAAACACATTGATGCTCTTTTGACCATCAAAATGATGGCAATAAATATTATAATATAAAAAAAGTTTTATACATCTGAAAGCTTCAATTACAAATTGATGTAAAGTTTATTTATAAACTAATTTAGAGAGGATCACTTGCTTATGATTGCTTGCGGCTGGTCCCGCATTATCTAATTTATGATTCACCAATCAGACGATTCCTAAGCCACTATTGTCACGATTACCAGCGATCGTATTCCATAAGATCGCTGGACTGCACGAACAATAACCATGGACTACAAATCTGCCATTTATGGACTACATTTTCATACATGCACTGCGGTCACACTCACACATGCTTCCTCATCTAGACTGATTACTTGCACCACCTGAGGATTGTCAGAGACTGATTGCACACACTATTTAATCCACACACTCACCTATTCACTTTGCCGATTCATGTTTACTGATAGTGACATTACAACGCGTTTTCCTTGTCTTGTTTCTCCGTGTTTTGACCTCAACCTTGTTTACCTTTTGTCTCCGTCTGCCGCCTGCCTTCTGACCTCTTGCCTGTTATTCGACTACGATTCTGGACTGTCTCCATATACCTGTTTGCTGTTTGTGTTGACCATTGCTTGCCTGACGATTCTAATAAACCTGCACGTGGATCCAAACCTCTGTTGTCAGTGTCACTCCTCGTGGTTACAACTATAAATACCCTAAGCTCCATATAACAGCTATCTTCGTTTTGAAGAATCTCCCCTTCCACCCCTACTCCTCCTTCTTTCCTAGATAAGAGGCACGGTGGTCCAGTGGTTTGCACTGTTGCCTCACAGCAAGAACATCACTGGTTCTAGTCCTTACCAAGCCCGTTTCTGTGCAGTTTACACATTCTCCCCATGCTCACATGGGTTTCACCCGGGTTCCCCGGTTTCCTTCCACCGCACAAAAACATGCAACTTAAGTTAATTGACTAATCCAAATCGGCACCATAGACATGCTCCTAGTAAGCAGTTATCTCTTAAGATCAATCACTATCTGTTCATTAGCTACTGCAGCAGAGGATTTCTTAAGATCTACCTGTTCTCAAACTCCCCTCTCGCCTTGCAAATGGTAGGGAGTCCCGGGAGTCCCTATCTTATGAGCTCAGGGCTCTCTCCCGGGACAGCATGTCAAAGAAGCTTTATAATCAAACATCAGCTAACTGTGAACTCTTGAAACTGGATTGTATATCCTTACAATGTCTGTAAACTACCTTGATGTATAATTGACATCTGTCCAAAAACTGTCAACATTTTGACGTCAATGTTAGATGTCAATTTGATGTCGTATTGACATCAAGGTAGTCAATAGACATTAAATCGATTTGCAGTTTTGATTTGCTTTAATTTTTATGTTATTTTGGCATCAAGGTACCTGCTGGTTTTCTATATGATTGACAAAAGTATTTTTGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTTTGTTTGTAG
Seq C2 exon
TTATTGAGTACAGCCGAGGATGTGGCCAAGATGCAGGAAGAGTTGGAGATGATGAGGCCTCAGCTGGAGGAAGCAGCCAAGGATACTGTGATCACAATGGAGAAAATAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115:ENSDART00000161471:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.348
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(16.2=67.7),PF127772=MT=PU(2.3=12.3)
A:
NA
C2:
PF127772=MT=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]