HsaINT0049185 @ hg19
Intron Retention
Gene
ENSG00000114841 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:2940]
Coordinates
chr3:52418802-52419463:+
Coord C1 exon
chr3:52418802-52418993
Coord A exon
chr3:52418994-52419352
Coord C2 exon
chr3:52419353-52419463
Length
359 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
GTCTCTGCCCTGACCCCTAGCTG
3' ss Score
7.76
Exon sequences
Seq C1 exon
ATCCAGGTCTGTGTGTACATCCACCAGTCGGTGTCCAAGAAGTGCATCGAGTACCTGGCAGAGCTGACCCGCCACAACTATGTGACCCCCAAGAGCTACTTGGAGCTGCTTCATATTTTCTCCATCCTCATCGGGCAGAAGAAACTGGAGCTGAAAACTGCCAAGAACCGCATGAAGAGCGGCCTCGACAAG
Seq A exon
GTGGGCCCAGGCGAGTCCCCGTGGACAAGGTCAGCTGCCTGCAGGCTGCCTGCTCACTCAGCCCTGACTCCAGGGTGACACCATGCTCCGCCTTTCAAACTGCAGCCCACGACGTTGAAGTGGGTGGCTTCCCCCCTCATCAAAAGAACAAAAGTTGCCAGTCAAGGGCCAGGCCAAAGCGTGGCACCCCACAGATATTTGGGGGACTGATGCCCTTCCTCTGGGGTCGGCTGGGCAATGTGGGGGCCACCGAAGCTGCCGGCCACAGCTTCTCTCTCATGAATGAGGGCGGCCCAGCAGGCCCTGTGCTCTCTCTGTCCCTGCCACACCTGTTTTCCTGTCTCTGCCCTGACCCCTAG
Seq C2 exon
CTGCTGCGCACTTCTGAGGATGTAGCCAAGATGCAGGAGGACCTGGAGAGTATGCACCCCCTGCTGGAGGAGGCTGCCAAGGACACCATGCTCACCATGGAGCAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114841-DNAH1:NM_015512:53
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.189
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(15.9=67.2),PF127772=MT=PU(2.3=12.5)
A:
NA
C2:
PF127772=MT=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGGTCTGTGTGTACATCCA
R:
CTTGATCTGCTCCATGGTGAGC
Band lengths:
302-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)