GgaINT0019497 @ galGal4
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr12:3083869-3084960:+
Coord C1 exon
chr12:3083869-3084060
Coord A exon
chr12:3084061-3084849
Coord C2 exon
chr12:3084850-3084960
Length
789 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
GCTCTACTCTGCTCCCACAGCTC
3' ss Score
8.34
Exon sequences
Seq C1 exon
GTTCAAATGTGTGTAGAAATCCACCAGAGTGTGGCAAGGAAGTGCCAAGTGTACCTGGCTGAGCTGGCCAGACACAATTATGTCACTCCCAAGAGCTACCTCGATTTCCTCAGCATCTTCTGTTCCCTGATTGGAAAAAAGAAACAGGAGCTGAAGACAGCCAAAAACAGGATGGAAGGAGGCCTGGATAAG
Seq A exon
GTCTGTCCCTCACAGCCCGTGCTCTGAGCGTTGTTTTTATAGCTGCAGAGATGTGGTGAGATGCCCCACACAGAGCTGGTTAAGAGGAGGAAACTCAAGCTACAGCAAATGAGAACGATGTGTTCTGCTGGGCTCAGTCCTCCCATAGGTCTGGGTCTGCAGCAGTGCTAAAAGCAATAATGGTCCCCATACTTCAGGCACCATAGAGTTCTCTATTAGCCCATCTCTCAGGAACTTCCTTATTAATCTTTTAATTGAAAGCCTTATAACAACAGCATGCTTCTGCTGCCTGACTGCCAGGAGCCTGTGTACTGAAAGTGCCTGCAGGCTGCAGCTTGGGAACAACAGCCTCGAGCTAATGTTTCCCATGCTAGACATGTTCAGAGCACAGCTCATACTTCTTTATAGACAATAATGCATGCCTAGCCTGAGTCTGGGTTTGGATTATAAGACACACTTAAATACCCCAAATAGCAAACGTGGGTTAGGAGGTCCCTAATCCAAACACTATGAACCAGCAGTTGGCTGGGATGGACTGGAGCAGGCAATAGCAGAGCTGACCCCAGAGGAAGGCTGTCTCTGGGACTTCATGCGTGTGACAGCCACTCACTAACCTCTTGCCTGTGACACAGGCACCATTAGGCTGTCCTGTCTAAGCACACCACAGCATTAGACTTGGATTATGGAGCAGGGCAAGACCTGTATCATACAGCCTGACACCAGGCAAGGAACGCCCACCAGGGCAACACATACCTTCCCTGGGGCTCTCGCTCTACTCTGCTCCCACAG
Seq C2 exon
CTCCTGCAAACAGCGGAGGATGTAGCAAGAATGCAGGAAGAGCTGGAGTCTGCCCGCCCTCTCCTGGCACAGGCAGCCAAGGACACACTGGCAACCATGGAGCAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(15.9=67.2),PF127772=MT=PU(2.3=12.5)
A:
NA
C2:
PF127772=MT=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAAATGTGTGTAGAAATCCACCA
R:
CTGCAGCTGCTCCATGGTTG
Band lengths:
303-1092
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]