RnoINT0048608 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7357834-7358475:-
Coord C1 exon
chr16:7358284-7358475
Coord A exon
chr16:7357945-7358283
Coord C2 exon
chr16:7357834-7357944
Length
339 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
TTCTCTGCTCCCAAACTCAGCTT
3' ss Score
5.61
Exon sequences
Seq C1 exon
ATTCACGTTTGCGTGTATATCCACCAGTCCGTGGCCAAGAAATGTGTCGAGTACCTGGCAGAGCTGGCCCGCCACAACTACGTGACCCCCAAGAGCTATTTGGAGCTGCTCAATATTTTCTCCATCCTCATTGGACAGAAGAAAATGGAACTGAAGACGGCCAAACACCGAATGAAGAGTGGCCTTGACAAG
Seq A exon
GTAGGCCCGAGGAAGGCCGGAAGGCAGTGGCTAGCCTAGCTACCCGTGCTGGGCTTCAGCAGTCTTTGATGCCATGGCACCCCAGCCTTGAGGCGCTGCAAAGGGTGACTTCCTTCTCAGTGAAAAAAAAATAGAACTTATCAGTGAAGGGCAAAGTCAAACAGGTACCCCCAACTTCTCAGGGAGGGAGGCCCCCTCCTCTAGAAACCACTGAGCAACCAGGGGCACCCGAGTGGAGGTGATTCAGCAGAACCCTCTCCTCAGAACCCTGAGGCCTGGCGCCTCTCTAGTTCCTGTAACAACCGTTTCGTGTTTTGTTTTCTCTGCTCCCAAACTCAG
Seq C2 exon
CTTCTGCGCACCTCGGAGGATGTGGCCAAGATGCAGGAGGAGCTGGAGATTATGCGCCCCCTGCTGGAAGAAGCTGCCAAGGACACCTTGCTCACTATGGACCAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:54
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(15.9=67.2),PF127772=MT=PU(2.2=12.5)
A:
NA
C2:
PF127772=MT=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTTGCGTGTATATCCACCAGT
R:
ATCTGGTCCATAGTGAGCAAGGT
Band lengths:
294-633
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]