BtaINT0050138 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49049141-49050364:-
Coord C1 exon
chr22:49050204-49050364
Coord A exon
chr22:49049367-49050203
Coord C2 exon
chr22:49049141-49049366
Length
837 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
ATGTCTCCTGCTCCTGGCAGCGG
3' ss Score
8.11
Exon sequences
Seq C1 exon
ACCTACAAGCAGCAGGGGAACACGGTGCTGAAGCTGGGGGACACGGTGATCCCCTACCACGAGGACTTCAAGATGTACATCACCACCAAGCTGCCCAACCCCCACTACACACCCGAGATCTCCACCAGACTCACCCTCATCAACTTCACCCTGTCACCCAG
Seq A exon
GTAAGCCCCTGGCCCCCAGCCCCCCGAGCATCAGCTCTGCCTGGACCTACCTGGCTGCCTCTCTCCCACCCCTGGGCTGAGACTCAGGGATTTTCCCCCTCGGAGACCCCACCAGCTTCCTCACAGGCTGTCTGCATTTCAGGTCATTCCAGCCCCTCCACCAATGCCCCACTGTTCCCACGTAAGAACCAATGTTCCCCGCTTCCCCCAGTTCATCCTGATCCTGGGTCTGGAGCCCCTCTCCCAGCCTCCCTGGGCAGCGCTAGCCCACCTCATCCGGATGCCCTTTCCCCACAGCCCTCGCTGGGCCCTTGTGCGCTCACCCCAGCGCTGTCCTGGAGCCCCGAGGGGGGCATACTCTGACTCCCTGCACCCAAGCCCTGTTTCTTGCCCTTGCTGCCCTACACCCAGGCACTGCAGCTTGTGCCAGCCACCCGCACAGAGTGCTAAGGCCTCCCTGACAGTGGCCACTGTGAACCTCTCCACGGATCAGGGGGTGAAAATTCCCTTAAGGCCTGGTCCTCCCCATCACCCATAGTCTCCTCCTGCTGAGAGGGAGTTTCTCAGAGACCCCAGCAGCTCCCACATTCAACTGCCTGGCCCCTCTTGGGATTCCAGGCTCCCACCTGAGGTCTCACTGAGAAATAATCACTTTGAATCCAGGCTCTGCCTTAGCCCTGCAGCCTGAGGCTGAGGTCAGACCTCCCAGGCTGACTCCAGCAGAGATGCTGGGCTCTTTGGAGCCCCAGGAGCACAGGTAGGCAGGTAAGCAGGCTCGAGGCTGGCCCTCCAGGGCTCACCAGGTGCTACAGACATAATGTCTCCTGCTCCTGGCAG
Seq C2 exon
CGGCCTAGAGGACCAGCTGCTGGGCCAGGTTGTGGCTGAGGAGCGGCCCGACCTGGAGGAAGCCAAGAACCAGCTGATTGTCAGTAACGCCAAGATGCGCCAGGAGCTGAAGGACATTGAAGACCAGATCCTGTACCGCCTCAGCTCCTCTGAGGGCAACCCCGTGGATGACATGGAGCTCATCAAGGTGCTGGAGGCTTCCAAGATGAAGGCTGCCGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794:ENSBTAT00000066095:61
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(23.0=100)
A:
NA
C2:
PF127812=AAA_9=FE(32.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAAGCAGCAGGGGAACAC
R:
CTCCAGCACCTTGATGAGCTC
Band lengths:
355-1192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]