DreINT0058013 @ danRer10
Intron Retention
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34392604-34393081:-
Coord C1 exon
chr11:34392921-34393081
Coord A exon
chr11:34392830-34392920
Coord C2 exon
chr11:34392604-34392829
Length
91 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
3' ss Seq
TTGTATGTGTTCATGCGCAGTGG
3' ss Score
7.3
Exon sequences
Seq C1 exon
ACGTATACGCATGAAGGCAACACAGTTCTAAAACTCGGAGACACTATCATTCACTATCATGACGATTTCAAAATGTACATCACCACGAAGCTGCCAAACCCACATTACTCGCCAGAGATCTCTACTAAAGTCACTCTCATCAACTTCACCCTCTCGCCCAG
Seq A exon
GTAGTGCTCTTGCATTTCTTCAAACATCAAGCAAGTTGTGAGATCCTACATTTTCACCAGTGTTGTGTTTTTTGTATGTGTTCATGCGCAG
Seq C2 exon
TGGGTTAGAGGATCAGCTTCTTGGGCGTCTCGTTGCCGAAGAGAGACCTGACCTAGAAGGAGCGAAGAATCAACTCATTGTGAGTAACGCACAGATGAAACAGGAGTTAAAGGAGATTGAAGATCAGATCCTGTTCAGGCTGAGCTCTTCAGAGGGAAACCCTGTTGATGACGAGGAGCTGATAAAAGTGCTTGGAGCCTCCAAAGTCAAAGCTGAAGAAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115:ENSDART00000161471:56
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(22.9=100)
A:
NA
C2:
PF127812=AAA_9=FE(32.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAACTTCACCCTCTCGCC
R:
AGCTCAGCCTGAACAGGATCT
Band lengths:
170-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]