HsaINT0049196 @ hg19
Intron Retention
Gene
ENSG00000114841 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:2940]
Coordinates
chr3:52425459-52426705:+
Coord C1 exon
chr3:52425459-52425619
Coord A exon
chr3:52425620-52426479
Coord C2 exon
chr3:52426480-52426705
Length
860 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTGTCCCCTGCCCCCGGCAGTGG
3' ss Score
6.68
Exon sequences
Seq C1 exon
ACGTACAAGCAGCAGGGAAACACGGTGCTGAAGCTGGGGGACACGGTGATCCCCTACCATGAGGACTTCAGGATGTACATCACCACCAAGCTGCCCAACCCACACTACACGCCCGAGATCTCCACCAAACTCACCCTCATCAACTTCACCCTGTCGCCCAG
Seq A exon
GTGAGCCCCCACTCTTGGGGACGCCCAAGCATCAGCTCTGCCTCTGCCTGCCCAGCTGCTCCTCTCCCACCCCCAGGCCGGGAGTCAGTGGGACTTTCCCCCACTCAAAGTCTCCACCAGTTTCACCCCAGGCACTCACATTCGAAGCCTTTCTAGCACTTCCACCAGCTCCTCCTACCCACTACTGTTTCCACCTAAGAACCTTCATCCCCACCTCATCCAGATCCCTGGTCAGGGTCCCCAGCCTCTGTGTCTAGCACCAGCCTCACCTCCTCCAGGGACCCCTTCTCTCCTACTGAGCCCTCGCCAGGCCCTGTGCCCTCATCCTCAGAGCTGACCCAGAGCCCTGAGTCGGGCACACTCTGGCTCTTTGAATCCAAATGCCCTGCTTCTTATCCTTGCTGCCACGAGCCTGGGCACTGTGGTTTTCGCTGGCCATCCATACACAGCCCACAGCCCATAGGCCTGCTTTGTGCTAAGGCCTCCATTTCAGTGGTCAGTGTGAACCTCTCCACAAAGCAGGGGGCAAAAACACCCTGAAGGCCTGCCCTGGGTATCACAGCCCCCACTTGCCAAGGAGGTATTGTCCAGAGACCCCAGCCGCTCACACATCCAACTGCTCAGCCCCTTCTAGGATTCCAGGCTGCCACCCAAGGTCTCACTGAGAACTGATGTCTTTGAAGGCAGGCTCTGCACTAGCCCTGCAGCCTGAGATGGAGGCTAGGCCTCCTAGGCCAACACTGGCAAGGATGCTGGGCTCTTGGAGCCCCAGAAGCACAGGTGGATGGGTGACCAGGTTCACGACTAGCCCTCCGGGGCCCACCAGGTATTACAGACTTGGTGTCCCCTGCCCCCGGCAG
Seq C2 exon
TGGCCTAGAGGACCAGCTACTGGGCCAGGTAGTGGCAGAGGAGCGACCCGACCTGGAGGAGGCCAAGAACCAGCTGATTATCAGTAATGCCAAGATGCGCCAGGAGCTGAAGGACATTGAGGACCAGATCCTGTACCGGCTCAGCTCCTCCGAGGGCAACCCTGTAGATGACATGGAACTCATCAAGGTGCTGGAAGCCTCCAAGATGAAGGCTGCTGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114841-DNAH1:NM_015512:63
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(23.0=100)
A:
NA
C2:
PF127812=AAA_9=FE(32.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAAGCAGCAGGGAAACACG
R:
GCTTCCAGCACCTTGATGAGT
Band lengths:
356-1216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)