RnoINT0048619 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7352309-7353220:-
Coord C1 exon
chr16:7353060-7353220
Coord A exon
chr16:7352535-7353059
Coord C2 exon
chr16:7352309-7352534
Length
525 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCCTCCCCGCTGCCCGGTAGTGG
3' ss Score
3.66
Exon sequences
Seq C1 exon
ACGTACAAGCAGCAAGGGAACACAGTCCTGAAGTTGGGAGACACAGTGATCCCCTACCATGAGGACTTCAGGATGTACATTACCACCAAGCTGCCCAACCCTCACTATTCACCAGAGGTCTCCACCAAACTCACCCTCATCAACTTTACACTGTCACCCAG
Seq A exon
GTAAGAGCCTCCACCCAAGACAACACACGCACGCACGCGCACACACACACGCACGCGCACACACACGCACACACGCACGCATGCACACACACCCACATGCACACATGCACACGCACGTGCACACGCGCACACACATGCACACACACGCATGCACGCACTTGCACGCATGCATGCACACGTGCATGCGCGCGTGCGCGCACACACACACACACACACACACACACAGCCTGCTACATACTAAAGTCTTCATTTGAGTTGCTACAACCAGGCCCTCTTAAGCCGTATCTTACTTGATTATTTACAGCCCCCTTTGCCAATGAAGAATCTAGCTGCCCAGCCCCTGCTACTCAAGGTCTCACTGAGAACCATTGGTTTGAAAGCAACCCTGCATTAGTCCCACAGATTGAGGCTAGGTCTCCCAGGCTGACACTGGCAACGGGCTCTTGATAGATAAGTGTGGACAGCATTGATCCCTGGAGTTCTCGGGCTGTTATAACCATTGATGTCCTCCCCGCTGCCCGGTAG
Seq C2 exon
TGGCCTAGAGGACCAGCTACTGGGCCAGGTAGTGGCCGAGGAACGGCCTGATCTGGAAGAGGCCAAGAACCAGCTGATTATCAGTAATGCCAAGATGCGGCAGGAGCTAAAGGACATTGAGGACCAGATCCTGTACCGCCTCAGCTCCTCCGAGGGTAACCCTGTGGACGACGTGGAGCTTATCAAGGTGCTGGAGGCTTCCAAGATGAAGGCTGCTGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:64
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(23.0=100)
A:
NA
C2:
PF127812=AAA_9=FE(32.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTACAAGCAGCAAGGGAACA
R:
GATAAGCTCCACGTCGTCCAC
Band lengths:
344-869
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]