GgaINT0019509 @ galGal3
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2922353-2922816:+
Coord C1 exon
chr12:2922353-2922513
Coord A exon
chr12:2922514-2922590
Coord C2 exon
chr12:2922591-2922816
Length
77 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
CCCCGTGGTTTTTGTTGCAGTGG
3' ss Score
8.34
Exon sequences
Seq C1 exon
ACCTACAAACAGCAAGGCAGAACGGTGCTGAAGCTGGGGGATGCGGTGATCCCTTACCACGAGGATTTCAAGCTGTACATCACCACCAACCTGTCCAACCCCCATTACAGCCCCGAGGTTTCCACAAAACTCACCCTCATCAACTTCACCATCTCACCCAG
Seq A exon
GTACGTGCTCACCCCAGCAGCTGCTCACACTGTTCAGCTTCATTCTACCTACCCTCACCCCGTGGTTTTTGTTGCAG
Seq C2 exon
TGGCTTGGAGGACCAACTGCTGGGACAGGTGGTGGCCGAGGAGCGGCCTGACTTAGAAGAGGCTCGAAACCAGCTGATCCTTAGCAATGCTGAGATGCGCCAGGAGCTGGAGGAGATAGAAGACCAGATCCTGTATCGGCTCAGCACTTCCGAAGGAAACCCTGTGGATGACTTGGAGCTCATCAAAGTGCTAGAAGCATCCAAGCTCAAGGCAGGGGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:63
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.039
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(22.7=100)
A:
NA
C2:
PF127812=AAA_9=FE(32.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGATCCCTTACCACGAGGA
R:
TTCTAAGTCAGGCCGCTCCTC
Band lengths:
175-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]