BtaINT0050153 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49042073-49043021:-
Coord C1 exon
chr22:49042787-49043021
Coord A exon
chr22:49042238-49042786
Coord C2 exon
chr22:49042073-49042237
Length
549 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGG
5' ss Score
7.13
3' ss Seq
TCCCCTCTCGCCTGCTCCAGGAA
3' ss Score
10.57
Exon sequences
Seq C1 exon
GTGATGCGCGAGTCAGTGTCAGAGCTCAAGACCAGGCCCAAGGAGGGGTGCTTCATCCACGGACTGTTCCTGGAAGGCGCCCGATGGGACCCTTTGGCCTTCCAGCTGGCTGAGTCTCGGCCCAAGGAGCTGTACACAGAGATGGCTGTTATCTGGCTCCTGCCCACGCCCAACCGCAAGGTCCAAGACCAGGACTTCTATCTGTGCCCCATCTACAAGACGCTGACCCGTGCTG
Seq A exon
GTATGGACCCAGGGCGGGGAAGCCTACACCACACGGAAGGCCATAGGCAGGGCCCAGGGTTGGGCCAGTTAGGCTGACCCAGGTTAGCTGAACGAGATGGCTGGCAGAGGTCAGTCAGCACTCCTGAGGCCCAGACAGAGCTGGTCCAGCAGCAGGCAGGGTAGTGCCCAGGGGCTGAGCTGAGTCTGTGGGGAGTGGCCCCTGAGCTCACCACCCTCATCTCCCTCAGCAGACCCATGTTGGATCCTGGGAGCCCCAGCCTGCCAATGGAGGTTCCCAGGAGCCAACAGGCCCAGACAGGATGGGTAGGCCCAGGCTGGATCCAGCAGGGAATGAGCAGGGGTATCAACTGTCCCATTCCAGTCCTTAACAGGTGCAGTAACCCAGGGCAGGTCTGAGCCTGGGCCACACTGGCCAGACAGGCTTCCTCTTGGGTCAGGTCCCTTCCTTGTCCCAAGCTCAGTCACCAAGGGACCACCTTCCTTTATACCCTGTTCCTGCCCCAGTTGAGGCAGCGAACTTAACCTCCTCCCCTCTCGCCTGCTCCAG
Seq C2 exon
GAACACTATCGACCACCGGCCACTCCACAAACTACGTCATTGCCGTGGAGATCCCCACTGACCAGCCCCAGCGACACTGGATAAAGCGTGGTGTGGCCCTAATCTGTGCCCTGGACTACTAGACCCAGACAAAAGGGCTGGGGCCAATTAAAGTTGCATTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794:ENSBTAT00000066095:75
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(11.0=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(5.1=87.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTTCATCCACGGACTGTT
R:
GCAACTTTAATTGGCCCCAGC
Band lengths:
345-894
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]