RnoINT0048634 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7346032-7346866:-
Coord C1 exon
chr16:7346632-7346866
Coord A exon
chr16:7346151-7346631
Coord C2 exon
chr16:7346032-7346150
Length
481 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
CCCCTTCTTGCCTGCTTCAGGAA
3' ss Score
10.18
Exon sequences
Seq C1 exon
GTACTGTCCTACGCATCATCAGAGATTGCGGAAAGGCCCAGTACGGGGTGCTATATCTACGGACTGTTCCTGGAAGGCGCTCGCTGGGACCCGTTCGATTTCCAGCTGGCTGAGTCCCGGCCCAAAGAGCTGTACACAGAGATGGCTGTTATCTGGCTTTTGCCAGTAGCTAACCGAAAGGTCCAGAACCAGGACTTCTACCTGTGCCCCATCTACAAGACTCTGACCCGTGCTG
Seq A exon
GTAAGGCTGCCAAGGAGACTCGTCAACTGCAGGTGGAAGTCTAGGAAGTTAATGCAGACCCCGATTGGCTGACCAGCAAGGCTGGTAGAGGTTTGGCCAGGCCAAAGCCCAATGCAGCAAGGTAGTATCTGGAGGTTCAATTCCCAGCCTGTTTGCCCTCCTTAGTAATCTACTGTTCACCTACAAGCCTCTATGGGCTCAGAAGACCTGAAGCCAAAAGCAGGGATGAAGCAGTGCTGGGCCCAATAGAGACTGAGATGGGTGGTAGCACCTTCCTCTTCAGTCACAGAGACATAAATCTAGGCAGGCCTGAGCCTTGATCAGATCCAGTCACAAAGGAGCCTGACTGTGGGGCCAGGGTCCCTCCCTATCCCCAACCCAGGTCTGTGGAACTCACTGCCTATGCTCCTGTCCCTAACCCAGCCCTTCTCTAGCCGTGATAGGGTATAACCTAAACTTAACCCCTTCTTGCCTGCTTCAG
Seq C2 exon
GAACATTATCGACTACAGGCCACTCAACCAACTACGTCATTGCTGTAGAGATCCCCAGCAACCAGCCTCAGCGACACTGGATAAAGCGTGGTGTAGCTCTCATCTGTGCCCTGGACTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:78
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(11.0=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(5.1=90.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCATCATCAGAGATTGCGG
R:
AGTCCAGGGCACAGATGAGAG
Band lengths:
342-823
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]