MmuINT0050566 @ mm9
Intron Retention
Gene
ENSMUSG00000019027 | Dnahc1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:32073561-32074466:-
Coord C1 exon
chr14:32074232-32074466
Coord A exon
chr14:32073734-32074231
Coord C2 exon
chr14:32073561-32073733
Length
498 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
CCCTTTCTTGTCTGTTTCAGGAA
3' ss Score
13.95
Exon sequences
Seq C1 exon
GTGTTGCCCGAGGCGTCATCAGAAATTAAGGAAAGGCCCCAGACAGGGTGCTATATCCATGGACTGTTCCTGGAAGGTGCTCGCTGGGACTCCATGAATTTCCAGCTGGCTGAGTCACGGCCCAAAGAGCTGTATACCGAGATGGCTGTTATCTGGCTCTTGCCAGAAGCTAACCGAAAGGTCCAGAACCAGGACTTCTACCTGTGCCCCATCTACAAGACTCTGACCCGTGCTG
Seq A exon
GTAAGGCTTACCAAGGCGGAGAATCTTCATTACAGGTGGATCTCTAGAAAGTTTACACGAACCCAGGTTAGCTGTCCAGGAAGGCTGGTAGAGGTTTGAGCCAGTCCAAAGCCCAATGCAGCAAGGTAGTATTTGGAGGTTCAGTTCCCAGCCTGCTTGCCCTCCTTAGTCATCTACTGTACATCCTACAAGCCTATAGGCCCCATCTTTCACCAGGGGCTCAGAACAGAGGCCAAAAGCAGGGACGAGGCAGTGCTGGGCTCAACAAGGAATGAGATGGGTGCTAGCACCTCCCTTTCAGTCACAGCACCATAACTAGGCAGGCCTGAGCCTTCATCAGATCCAGCCACAATGGGGCCCGACTGTGGGGCTAGGATCCCTCCCTAGCCCCAACCCAGGTCTATCAAACTCACTGTACATGTTCCTGTCCCTAACTAACCCAGCCCTTCTCTGTGATAAGAGTATAACCTAAACTTCCCCCTTTCTTGTCTGTTTCAG
Seq C2 exon
GAACATTATCAACTACAGGCCACTCAACCAACTACGTCATTGCTGTGGAGATCCCCAGCAACCAGCCTCAGCGACACTGGATAAAGCGTGGTGTAGCTCTCATCTGTGCCCTGGATTACTAGACCCAGATAGAAGGGCAAGGGCCATTAAAAGTTCTCCAGTAAGTCCTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027-Dnahc1:NM_001033668:77
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(11.0=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(5.1=87.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGAGGCGTCATCAGAAATT
R:
CCAGGGCACAGATGAGAGCTA
Band lengths:
343-841
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: